RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SCIMPQ6UWF3 145 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 DEFB106AQ8N104 65 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 OR2W6PQ8NHA6 318 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 TRAPPC12Q8WVT3 735 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 COPS8Q99627 209 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 RTFDC1Q9BY42 306 aaPredicted RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 ULBP1Q9BZM6 244 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 ENY2Q9NPA8 101 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 ARHGEF4Q9NR80 690 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 DKKL1Q9UK85 242 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 SNX12Q9UMY4 172 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 CFL2Q9Y281 166 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 UBE2QL1A1L167 161 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 C1RP00736 705 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 FESP07332 822 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 FASP25445 335 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 PPP3R1P63098 170 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 TUSC3Q13454 348 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 CCNIQ14094 377 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 FRG1Q14331 258 aaKnown RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 BRMS1LQ5PSV4 323 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 NIPAL1Q6NVV3 410 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 KLHL17Q6TDP4 642 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 NLRP14Q86W24 1093 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 CELF5Q8N6W0 485 aaKnown RBP6.14□□□□□ -1.43
SCN1A-217ENST00000637988 ADAMTS15Q8TE58 950 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 WDR60Q8WVS4 1066 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 SLC9A6Q92581 669 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 MAML3Q96JK9 1138 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 C12orf66Q96MD2 445 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 TBC1D10AQ9BXI6 508 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 PCDH12Q9NPG4 1184 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 ASB3Q9Y575 518 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 DUSP10Q9Y6W6 482 aa6.14□□□□□ -1.43
SCN1A-217ENST00000637988 POP4O95707 220 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 OTCP00480 354 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 CSTBP04080 98 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 DCKP27707 260 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 FAUP35544 74 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 AP1S1P61966 158 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SPRYD7Q5W111 196 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 FUT10Q6P4F1 479 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 DNAAF5Q86Y56 855 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SAMD14Q8IZD0 417 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ABHD5Q8WTS1 349 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SHC3Q92529 594 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 RNF31Q96EP0 1072 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 NSMCE3Q96MG7 304 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ERP44Q9BS26 406 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 MAF1Q9H063 256 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 MRM3Q9HC36 420 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 PNO1Q9NRX1 252 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SNX7Q9UNH6 387 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 LMTK2Q8IWU2 1503 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 A0A0X1KG70 313 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 CCDC162PA2VCL2 907 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 RLN1P04808 185 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 C8AP07357 584 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ALPIP09923 528 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 FDPSP14324 419 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 PPIBP23284 216 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 HSD17B2P37059 387 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SOX10P56693 466 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 PDGFRLQ15198 375 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ZC3H12AQ5D1E8 599 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 PAPD7Q5XG87 772 aaKnown RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ARMCX6Q7L4S7 300 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 THAP5Q7Z6K1 395 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SLC9B2Q86UD5 537 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 TMEM192Q8IY95 271 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 FMR1NBQ8N0W7 255 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-217ENST00000637988 TOP6BLQ8N6T0 577 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 KREMEN2Q8NCW0 462 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 GPR156Q8NFN8 814 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 PPP3R2Q96LZ3 170 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 NRDE2Q9H7Z3 1164 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 TMPRSS4Q9NRS4 437 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SPEF1Q9Y4P9 236 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SLIT1O75093 1534 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 PRR5-ARHGAP8B1AHC4 643 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 IFNA6P05013 189 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 FGF1P05230 155 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 CHN1P15882 459 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 DGKGP49619 791 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 AIF1P55008 147 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 PLP2Q04941 152 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 DUSP28Q4G0W2 176 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 C2orf27AQ580R0 203 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 PCID2Q5JVF3 399 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 CCNYL2Q5T2Q4 361 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 AGBL2Q5U5Z8 902 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 CFAP206Q8IYR0 622 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 ABRAQ8N0Z2 381 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 C7orf57Q8NEG2 295 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 TTLQ8NG68 377 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 PPCDCQ96CD2 204 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 NECTIN4Q96NY8 510 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 DGAT2Q96PD7 388 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 FAM111AQ96PZ2 611 aa6.13□□□□□ -1.43
SCN1A-217ENST00000637988 SGK2Q9HBY8 427 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms