RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 DSG2Q14126 1118 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 RPS6KA2Q15349 733 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 ALX1Q15699 326 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 CCDC85BQ15834 202 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 IMPG1Q17R60 797 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 AKIRIN2Q53H80 203 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 PAN3Q58A45 887 aaKnown RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 CDKL4Q5MAI5 379 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 OTUD3Q5T2D3 398 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 DCAF12L1Q5VU92 463 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 MACC1Q6ZN28 852 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 CHST15Q7LFX5 561 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 TFAP2DQ7Z6R9 452 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 PPIL6Q8IXY8 311 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 CYP4Z2PQ8N1L4 340 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 TMEM199Q8N511 208 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 DPP10Q8N608 796 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 CELF2-AS1Q8N7Q2 184 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 SRFBP1Q8NEF9 429 aaKnown RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 CLHC1Q8NHS4 586 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 NANPQ8TBE9 248 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 IGDCC4Q8TDY8 1250 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 PHF10Q8WUB8 498 aaKnown RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 TFAP2CQ92754 450 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 SLCO2A1Q92959 643 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 MBOAT7Q96N66 472 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 GAD1Q99259 594 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 TINAGL1Q9GZM7 467 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 GANQ9H2C0 597 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 PPIL3Q9H2H8 161 aaKnown RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 RANGRFQ9HD47 186 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 NIT2Q9NQR4 276 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 AAASQ9NRG9 546 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 NUFIP1Q9UHK0 495 aaKnown RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 ANAPC2Q9UJX6 822 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 PDE10AQ9Y233 779 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 NDUFAF1Q9Y375 327 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 METTL21EPA6NDL7 271 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 ARHGEF33A8MVX0 844 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 SORBS2O94875 1100 aaKnown RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 TCF4P15884 667 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 CYP7A1P22680 504 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 IL6STP40189 918 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 HTR3AP46098 478 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 PLA2G16P53816 162 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 NOMO3P69849 1222 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 MRPS5P82675 430 aaKnown RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 MYL7Q01449 175 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 DEFA5Q01523 94 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 TNFAIP1Q13829 316 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 NOMO1Q15155 1222 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 STEAP3Q658P3 488 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 FAM92BQ6ZTR7 304 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 EIF3MQ7L2H7 374 aaKnown RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 ERO1BQ86YB8 467 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 RHOT1Q8IXI2 618 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 UBQLNLQ8IYU4 475 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 OR13J1Q8NGT2 312 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF431Q8TF32 576 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 TOP1MTQ969P6 601 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 SLC4A9Q96Q91 983 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 NIPAL2Q9H841 368 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 LGR6Q9HBX8 967 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 PIH1D1Q9NWS0 290 aaKnown RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 TMPRSS11EQ9UL52 423 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 CNOT6Q9ULM6 557 aaKnown RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 CLEC4AQ9UMR7 237 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 ATF5Q9Y2D1 282 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-216ENST00000637968 VWA7Q9Y334 891 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 MAB21L2Q9Y586 359 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 U3KQV3 271 aa5.75□□□□□ -1.49
SCN1A-216ENST00000637968 PRSS51A0A1B0GVH4 220 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 DFFAO00273 331 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 WWP2O00308 870 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 KPNA3O00505 521 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 FSCN2O14926 492 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 GLRA3O75311 464 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 NIPSNAP2O75323 286 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 IL6P05231 212 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 FCER2P06734 321 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 NUDT7P0C024 238 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 C7P10643 843 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ADRA2BP18089 450 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 WARSP23381 471 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 MYL9P24844 172 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 PSMA3P25788 255 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 HOXC13P31276 330 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 MARCKSL1P49006 195 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 CLCNKBP51801 687 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 KCNK10P57789 538 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 RPS8P62241 208 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 RHDQ02161 417 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 RGS1Q08116 209 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 KCNJ11Q14654 390 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 SMCO1Q147U7 214 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 PUM3Q15397 648 aaKnown RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ZNF284Q2VY69 593 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 ZIK1Q3SY52 487 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-216ENST00000637968 TRIM72Q6ZMU5 477 aa5.74□□□□□ -1.49
SCN1A-216ENST00000637968 RNF111Q6ZNA4 994 aa5.74□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms