RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 RAB7BQ96AH8 199 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 PBXIP1Q96AQ6 731 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 ARRDC3Q96B67 414 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 DNAJC1Q96KC8 554 aaKnown RBP15.47■□□□□ 0.07
UPF1-206ENST00000598471 ZNF778Q96MU6 729 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 HDAC8Q9BY41 377 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 LTB4R2Q9NPC1 389 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 PCDH12Q9NPG4 1184 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 VPS18Q9P253 973 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 B4GALT6Q9UBX8 382 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 SLC2A6Q9UGQ3 507 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 SARDHQ9UL12 918 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 MMP17Q9ULZ9 603 aa15.47■□□□□ 0.07
UPF1-206ENST00000598471 KANSL1LA0AUZ9 987 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 TLDC2A0PJX2 215 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 SMIM23A6NLE4 172 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 AURKAO14965 403 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 BUD23O43709 281 aaKnown RBP15.46■□□□□ 0.07
UPF1-206ENST00000598471 ADAM23O75077 832 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 ATG13O75143 517 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 CDH16O75309 829 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 DNTTP04053 509 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 ADRB3P13945 408 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 TARSP26639 723 aaKnown RBP15.46■□□□□ 0.07
UPF1-206ENST00000598471 TMPRSS15P98073 1019 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 ZBTB16Q05516 673 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 TTC31Q49AM3 519 aaPredicted RBP15.46■□□□□ 0.07
UPF1-206ENST00000598471 ZDHHC20Q5W0Z9 365 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 LRRC66Q68CR7 880 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 AFTPHQ6ULP2 937 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 CRTC1Q6UUV9 634 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 MARK2Q7KZI7 788 aaKnown RBP15.46■□□□□ 0.07
UPF1-206ENST00000598471 TAOK1Q7L7X3 1001 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 TDRPQ86YL5 185 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 SIX5Q8N196 739 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 OTUD6BQ8N6M0 293 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 PPM1NQ8N819 430 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 OR13C4Q8NGS5 318 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 OR13J1Q8NGT2 312 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 OR6P1Q8NGX9 317 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 EPS8L3Q8TE67 593 aaKnown RBP15.46■□□□□ 0.07
UPF1-206ENST00000598471 HDAC10Q969S8 669 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 SMIM14Q96QK8 99 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 PAFAH2Q99487 392 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 STMN4Q9H169 189 aaPredicted RBP15.46■□□□□ 0.07
UPF1-206ENST00000598471 MFSD1Q9H3U5 465 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 RAD18Q9NS91 495 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 IL17CQ9P0M4 197 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 PSMC3IPQ9P2W1 217 aaPredicted RBP15.46■□□□□ 0.07
UPF1-206ENST00000598471 SCML1Q9UN30 329 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 KCTD3Q9Y597 815 aa15.46■□□□□ 0.07
UPF1-206ENST00000598471 F5P12259 2224 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 A0A1W2PQF6 199 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 KRBA1A5PL33 1030 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 NEMP1O14524 444 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 MID1O15344 667 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 CLDN7O95471 211 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 ERVK-10P10266 1014 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 CHRNB1P11230 501 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 PSMA3P25788 255 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 ATP5DP30049 168 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 MMP12P39900 470 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 ARCN1P48444 511 aaKnown RBP15.45■□□□□ 0.06
UPF1-206ENST00000598471 RPS14P62263 151 aaKnown RBP15.45■□□□□ 0.06
UPF1-206ENST00000598471 EFTUD2Q15029 972 aaKnown RBP eCLIP15.45■□□□□ 0.063e-6■■■□□ 18.5
UPF1-206ENST00000598471 RASA2Q15283 850 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 HSP90AA5PQ58FG0 334 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 LRRC73Q5JTD7 316 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 KIAA1211LQ6NV74 962 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 NEPROQ6NW34 567 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 SLC26A11Q86WA9 606 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 UNC5BQ8IZJ1 945 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 SLC44A1Q8WWI5 657 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.45■□□□□ 0.06
UPF1-206ENST00000598471 ERLEC1Q96DZ1 483 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 MRRFQ96E11 262 aaKnown RBP15.45■□□□□ 0.06
UPF1-206ENST00000598471 OMDQ99983 421 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 CENPHQ9H3R5 247 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 LMAN1LQ9HAT1 526 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 MED4Q9NPJ6 270 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 IARS2Q9NSE4 1012 aaKnown RBP15.45■□□□□ 0.06
UPF1-206ENST00000598471 PKD2L2Q9NZM6 624 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 MYLKQ15746 1914 aa15.45■□□□□ 0.06
UPF1-206ENST00000598471 CKAP5Q14008 2032 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 A8MX80 341 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 CHURC1-FNTBB4DL54 471 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 H0Y858 1186 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 H7C0S8 307 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 AGPSO00116 658 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 PSMD11O00231 422 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 PFDN6O15212 129 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 RGS16O15492 202 aaPredicted RBP15.44■□□□□ 0.06
UPF1-206ENST00000598471 DCXO43602 365 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 C1QAP02745 245 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 ELFN1P0C7U0 828 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 COL9A1P20849 921 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 P2RY2P41231 377 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 SLCO1A2P46721 670 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 SERPINB9P50453 376 aa15.44■□□□□ 0.06
UPF1-206ENST00000598471 STC1P52823 247 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms