RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ATG14Q6ZNE5 492 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 TSEN2Q8NCE0 465 aaKnown RBP12.55□□□□□ -0.4
TRIM28-212ENST00000597995 KIAA1524Q8TCG1 905 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 EXTL1Q92935 676 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 USP7Q93009 1102 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 EIF3CQ99613 913 aaKnown RBP12.55□□□□□ -0.4
TRIM28-212ENST00000597995 SLC39A8Q9C0K1 460 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 TMEM168Q9H0V1 697 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 DPEP2Q9H4A9 486 aa12.55□□□□□ -0.4
TRIM28-212ENST00000597995 MRPL40Q9NQ50 206 aaKnown RBP12.55□□□□□ -0.4
TRIM28-212ENST00000597995 AKAP7Q9P0M2 348 aaPredicted RBP12.55□□□□□ -0.4
TRIM28-212ENST00000597995 CNOT8Q9UFF9 292 aaKnown RBP12.55□□□□□ -0.4
TRIM28-212ENST00000597995 C9orf172C9J069 976 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 TERTO14746 1132 aaKnown RBP12.54□□□□□ -0.4
TRIM28-212ENST00000597995 ZW10O43264 779 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 CPNE6O95741 557 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 PRKCGP05129 697 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 ELFN1P0C7U0 828 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 KRT10P13645 584 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 RGRP47804 291 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 PAPOLAP51003 745 aaKnown RBP12.54□□□□□ -0.4
TRIM28-212ENST00000597995 BCL2L1Q07817 233 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 RFTN1Q14699 578 aaPredicted RBP12.54□□□□□ -0.4
TRIM28-212ENST00000597995 PPP1R2P3Q6NXS1 205 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 PNCKQ6P2M8 343 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 DPPA4Q7L190 304 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 PIM3Q86V86 326 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 C17orf82Q86X59 251 aaPredicted RBP12.54□□□□□ -0.4
TRIM28-212ENST00000597995 ZFAND4Q86XD8 727 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 SPOCK2Q92563 424 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 ZNF653Q96CK0 615 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 KCTD15Q96SI1 283 aaPredicted RBP12.54□□□□□ -0.4
TRIM28-212ENST00000597995 SNRNP25Q9BV90 132 aaKnown RBP12.54□□□□□ -0.4
TRIM28-212ENST00000597995 WDR26Q9H7D7 661 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 KCTD5Q9NXV2 234 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 FOXJ2Q9P0K8 574 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 IFNKQ9P0W0 207 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 PCSK1NQ9UHG2 260 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 CAPN11Q9UMQ6 739 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 AP4E1Q9UPM8 1137 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 PCDHGA4Q9Y5G9 962 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 NAV2Q8IVL1 2488 aa12.54□□□□□ -0.4
TRIM28-212ENST00000597995 TLN1Q9Y490 2541 aaKnown RBP12.53□□□□□ -0.4
TRIM28-212ENST00000597995 ANKRD36A6QL64 1941 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 A0A1W2PQ67 120 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 PRSS38A1L453 326 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 B4DGG1 531 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 TRAFD1O14545 582 aaPredicted RBP12.53□□□□□ -0.4
TRIM28-212ENST00000597995 HGSO14964 777 aaPredicted RBP12.53□□□□□ -0.4
TRIM28-212ENST00000597995 SUV39H1O43463 412 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 B4GAT1O43505 415 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 LRCH4O75427 683 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 GYPCP04921 128 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 TCF4P15884 667 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 GM2AP17900 193 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 MIPP30301 263 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 MAPK10P53779 464 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 NR1D2Q14995 579 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 TBR1Q16650 682 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 PHF19Q5T6S3 580 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 TMPRSS9Q7Z410 1059 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 ZNF438Q7Z4V0 828 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 SFTPA2Q8IWL1 248 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 CCL4L1Q8NHW4 92 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 GPBAR1Q8TDU6 330 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 FNIP1Q8TF40 1166 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 CPLX3Q8WVH0 158 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 SYN2Q92777 582 aaPredicted RBP12.53□□□□□ -0.4
TRIM28-212ENST00000597995 CELF6Q96J87 481 aaKnown RBP12.53□□□□□ -0.4
TRIM28-212ENST00000597995 CINPQ9BW66 212 aaPredicted RBP12.53□□□□□ -0.4
TRIM28-212ENST00000597995 LGR4Q9BXB1 951 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 GSDMCQ9BYG8 508 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 SEMA6CQ9H3T2 930 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 CYP4F12Q9HCS2 524 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 MYO1AQ9UBC5 1043 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 HECTD1Q9ULT8 2610 aa12.53□□□□□ -0.4
TRIM28-212ENST00000597995 A0A087X0T9 212 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 CYSRT1A8MQ03 144 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 EEF2KO00418 725 aaKnown RBP12.52□□□□□ -0.41
TRIM28-212ENST00000597995 FGF1P05230 155 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 FAM87AP0C7U9 286 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 FAM228BP0C875 321 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 MYCLP1P12525 358 aaPredicted RBP12.52□□□□□ -0.41
TRIM28-212ENST00000597995 CCNB1P14635 433 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 IL1R2P27930 398 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 GPR3P46089 330 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 RENBPP51606 427 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 AP1S1P61966 158 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 TPM4P67936 248 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 ZBED6P86452 979 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 IL10RBQ08334 325 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 TRA2AQ13595 282 aaKnown RBP eCLIP12.52□□□□□ -0.41
TRIM28-212ENST00000597995 PEX6Q13608 980 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 C16orf72Q14CZ0 275 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 ACOX1Q15067 660 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 MAP9Q49MG5 647 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 ERMARDQ5T6L9 678 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 VASH2Q86V25 355 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 ARHGAP12Q8IWW6 846 aa12.52□□□□□ -0.41
TRIM28-212ENST00000597995 TP53INP2Q8IXH6 220 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms