RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, human

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-208	ENST00000595726	FASTKD2	Q9NYY8	710 aa	Known RBP eCLIP	13.79	□□□□□ -0.2
SHKBP1-208	ENST00000595726	LIMA1	Q9UHB6	759 aa	Known RBP	13.79	□□□□□ -0.2
SHKBP1-208	ENST00000595726	TLK1	Q9UKI8	766 aa		13.79	□□□□□ -0.2
SHKBP1-208	ENST00000595726	HIVEP3	Q5T1R4	2406 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	IGHV1OR21-1	A0A087WYE8	117 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	CACNB4	O00305	520 aa	Predicted RBP	13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	FUCA1	P04066	466 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	CYP11B1	P15538	503 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	AK4	P27144	223 aa	Predicted RBP	13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	KRT9	P35527	623 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	BPIFB4	P59827	614 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	ABHD18	Q0P651	414 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	MRPL49	Q13405	166 aa	Known RBP	13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	ERV3-1	Q14264	604 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	NR1D2	Q14995	579 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	PTPN20	Q4JDL3	420 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	ANO6	Q4KMQ2	910 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	SNAP47	Q5SQN1	464 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	FKBP15	Q5T1M5	1219 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	APTX	Q7Z2E3	356 aa	Known RBP	13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	PELI3	Q8N2H9	469 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	NT5C3B	Q969T7	300 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	STK33	Q9BYT3	514 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	TTYH3	Q9C0H2	523 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	FAM207A	Q9NSI2	230 aa	Predicted RBP	13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	TAAR2	Q9P1P5	351 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	DKK3	Q9UBP4	350 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	SIK3	Q9Y2K2	1263 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	KCTD3	Q9Y597	815 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	ST14	Q9Y5Y6	855 aa		13.78	□□□□□ -0.2
SHKBP1-208	ENST00000595726	CSMD2	Q7Z408	3487 aa		13.77	□□□□□ -0.2
SHKBP1-208	ENST00000595726	LGALS16	A8MUM7	142 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	EPHB6	O15197	1021 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	BUB1	O43683	1085 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	STK17B	O94768	372 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	TMCC1	O94876	653 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	TACC2	O95359	2948 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	CCNB1	P14635	433 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	RAB15	P59190	212 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	KIAA1024L	P59773	190 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	MC1R	Q01726	317 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	ELP6	Q0PNE2	266 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	BIRC2	Q13490	618 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	CLPP	Q16740	277 aa	Predicted RBP	13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	UGP2	Q16851	508 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	RAB6C	Q53S08	254 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	C1QL3	Q5VWW1	255 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	PHLDB2	Q86SQ0	1253 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	FAM131B	Q86XD5	332 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	ZNF761	Q86XN6	746 aa	Predicted RBP	13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	ANKRD20A12P	Q8NF67	263 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	PRR7	Q8TB68	274 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	EPS8L1	Q8TE68	723 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	PTCD2	Q8WV60	388 aa	Known RBP	13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	PGAP3	Q96FM1	320 aa	Predicted RBP	13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	EXOC2	Q96KP1	924 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	GDAP1L1	Q96MZ0	367 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	BPIFA3	Q9BQP9	254 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	EFHD1	Q9BUP0	239 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	KLC2	Q9H0B6	622 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	RAB6C	Q9H0N0	254 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	SYNC	Q9H7C4	482 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	CARS2	Q9HA77	564 aa	Known RBP	13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	MAP4K5	Q9Y4K4	846 aa		13.77	□□□□□ -0.21
SHKBP1-208	ENST00000595726	DOCK4	Q8N1I0	1966 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	PRSS38	A1L453	326 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	LRRC10B	A6NIK2	292 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	TEX33	O43247	280 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	DNAJB5	O75953	348 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	RECQL5	O94762	991 aa	Predicted RBP	13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	DDAH2	O95865	285 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	F9	P00740	461 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	ATP1A3	P13637	1013 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	CDH5	P33151	784 aa	Predicted RBP	13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	GPR3	P46089	330 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	JAM2	P57087	298 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	POLR2F	P61218	127 aa	Known RBP	13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	MC2R	Q01718	297 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	RAD51	Q06609	339 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	AGER	Q15109	404 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	SYCP1	Q15431	976 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	SLC25A52	Q3SY17	297 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	NADK2	Q4G0N4	442 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	PRR30	Q53SZ7	412 aa	Predicted RBP	13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	TRNP1	Q6NT89	227 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	RWDD4	Q6NW29	188 aa	Known RBP	13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	SLC30A9	Q6PML9	568 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	NOP9	Q86U38	636 aa	Known RBP	13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	ZSWIM9	Q86XI8	627 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	ZNF397	Q8NF99	534 aa	Predicted RBP	13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	TCTN2	Q96GX1	697 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	NAT10	Q9H0A0	1025 aa	Known RBP	13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	RRN3	Q9NYV6	651 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	HPCAL4	Q9UM19	191 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	ANKRD36	A6QL64	1941 aa		13.76	□□□□□ -0.21
SHKBP1-208	ENST00000595726	TRBV23OR9-2	A0A075B6M9	112 aa		13.75	□□□□□ -0.21
SHKBP1-208	ENST00000595726	WIPF3	A6NGB9	483 aa		13.75	□□□□□ -0.21
SHKBP1-208	ENST00000595726		A8MX80	341 aa		13.75	□□□□□ -0.21
SHKBP1-208	ENST00000595726	TCP11X1	B4DZS4	312 aa		13.75	□□□□□ -0.21
SHKBP1-208	ENST00000595726	FAM72C	H0Y354	149 aa		13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms