RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 F11P03951 625 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 PABPC1LQ4VXU2 614 aaKnown RBP19.71■□□□□ 0.75
CLIP3-206ENST00000593074 GPR158Q5T848 1215 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 ZNF783Q6ZMS7 281 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 TMEM150AQ86TG1 271 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 ITIH5Q86UX2 942 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 CDKN2AIPNLQ96HQ2 116 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 EXOC2Q96KP1 924 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 RTKNQ9BST9 563 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 SCUBE2Q9NQ36 999 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 SMPD4Q9NXE4 827 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 SSX2IPQ9Y2D8 614 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 CBX4O00257 560 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 CCNT2O60583 730 aaKnown RBP19.71■□□□□ 0.75
CLIP3-206ENST00000593074 PENKP01210 267 aaPredicted RBP19.71■□□□□ 0.75
CLIP3-206ENST00000593074 ITGAXP20702 1163 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 SP100P23497 879 aaPredicted RBP19.71■□□□□ 0.75
CLIP3-206ENST00000593074 ADSLP30566 484 aaPredicted RBP19.71■□□□□ 0.75
CLIP3-206ENST00000593074 PPARGP37231 505 aaPredicted RBP19.71■□□□□ 0.75
CLIP3-206ENST00000593074 ARF5P84085 180 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 NFKB2Q00653 900 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 CREMQ03060 361 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 SULT2A1Q06520 285 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 GALNT1Q10472 559 aaPredicted RBP19.71■□□□□ 0.75
CLIP3-206ENST00000593074 TAF1AQ15573 450 aaPredicted RBP19.71■□□□□ 0.75
CLIP3-206ENST00000593074 PDCD2Q16342 344 aaPredicted RBP19.71■□□□□ 0.75
CLIP3-206ENST00000593074 RALGPS1Q5JS13 557 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 SH2D4BQ5SQS7 431 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 RNF219Q5W0B1 726 aaPredicted RBP19.71■□□□□ 0.75
CLIP3-206ENST00000593074 OTOP2Q7RTS6 562 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 ISCA2Q86U28 154 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 SH3RF2Q8TEC5 729 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 PPP1R36Q96LQ0 422 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 TRPC7Q9HCX4 862 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 INTS10Q9NVR2 710 aaKnown RBP19.71■□□□□ 0.75
CLIP3-206ENST00000593074 MTF2Q9Y483 593 aaPredicted RBP19.71■□□□□ 0.75
CLIP3-206ENST00000593074 LRRC42Q9Y546 428 aa19.71■□□□□ 0.75
CLIP3-206ENST00000593074 ANKRD36A6QL64 1941 aa19.7■□□□□ 0.74
CLIP3-206ENST00000593074 TRPC5OSA6NMA1 111 aa19.7■□□□□ 0.74
CLIP3-206ENST00000593074 LILRB3O75022 631 aa19.7■□□□□ 0.74
CLIP3-206ENST00000593074 SMAD3P84022 425 aaKnown RBP19.7■□□□□ 0.74
CLIP3-206ENST00000593074 PGM2L1Q6PCE3 622 aa19.7■□□□□ 0.74
CLIP3-206ENST00000593074 C16orf59Q7L2K0 433 aa19.7■□□□□ 0.74
CLIP3-206ENST00000593074 SDCCAG8Q86SQ7 713 aaPredicted RBP19.7■□□□□ 0.74
CLIP3-206ENST00000593074 RSRC1Q96IZ7 334 aaKnown RBP19.7■□□□□ 0.74
CLIP3-206ENST00000593074 LENG8Q96PV6 779 aaPredicted RBP19.7■□□□□ 0.74
CLIP3-206ENST00000593074 CYP2S1Q96SQ9 504 aa19.7■□□□□ 0.74
CLIP3-206ENST00000593074 MUC3BQ9H195 1237 aa19.7■□□□□ 0.74
CLIP3-206ENST00000593074 CYP4F12Q9HCS2 524 aa19.7■□□□□ 0.74
CLIP3-206ENST00000593074 ZNF334Q9HCZ1 680 aaPredicted RBP19.7■□□□□ 0.74
CLIP3-206ENST00000593074 STK39Q9UEW8 545 aa19.7■□□□□ 0.74
CLIP3-206ENST00000593074 ARHGAP26Q9UNA1 814 aa19.7■□□□□ 0.74
CLIP3-206ENST00000593074 LOC100653049A0A140TA62 436 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 TMEM233B4DJY2 109 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 TBX10O75333 385 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 KRT34O76011 436 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 FGF18O76093 207 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 CD160O95971 181 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 C1RP00736 705 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 RPSAP08865 295 aaKnown RBP19.69■□□□□ 0.74
CLIP3-206ENST00000593074 SPATA31D3P0C874 917 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 PIK3R1P27986 724 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 CA8P35219 290 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 SATB1Q01826 763 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 SLC34A1Q06495 639 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 CCDC6Q16204 474 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 C1orf146Q5VVC0 180 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 AFTPHQ6ULP2 937 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 SPATA31D4Q6ZUB0 917 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 GLT6D1Q7Z4J2 308 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 NECAB2Q7Z6G3 386 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 MYLK4Q86YV6 388 aaPredicted RBP19.69■□□□□ 0.74
CLIP3-206ENST00000593074 RMDN1Q96DB5 314 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 L3HYPDHQ96EM0 354 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 AARSD1Q9BTE6 412 aaKnown RBP19.69■□□□□ 0.74
CLIP3-206ENST00000593074 ALG9Q9H6U8 611 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 EML4Q9HC35 981 aaKnown RBP19.69■□□□□ 0.74
CLIP3-206ENST00000593074 HNRNPLP14866 589 aaKnown RBP eCLIP19.69■□□□□ 0.74
CLIP3-206ENST00000593074 ZNF37AP17032 561 aaPredicted RBP19.69■□□□□ 0.74
CLIP3-206ENST00000593074 CUL3Q13618 768 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 MDGA1Q8NFP4 955 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 PTERQ96BW5 349 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 FAR2Q96K12 515 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 POLR3BQ9NW08 1133 aaPredicted RBP19.69■□□□□ 0.74
CLIP3-206ENST00000593074 GTSE1Q9NYZ3 720 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 CDH22Q9UJ99 828 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 RAI2Q9Y5P3 530 aa19.69■□□□□ 0.74
CLIP3-206ENST00000593074 SDHDO14521 159 aa19.68■□□□□ 0.74
CLIP3-206ENST00000593074 ZMPSTE24O75844 475 aa19.68■□□□□ 0.74
CLIP3-206ENST00000593074 TMCC1O94876 653 aa19.68■□□□□ 0.74
CLIP3-206ENST00000593074 SLC4A1P02730 911 aa19.68■□□□□ 0.74
CLIP3-206ENST00000593074 THRAP10827 490 aa19.68■□□□□ 0.74
CLIP3-206ENST00000593074 CD1DP15813 335 aa19.68■□□□□ 0.74
CLIP3-206ENST00000593074 PEX6Q13608 980 aa19.68■□□□□ 0.74
CLIP3-206ENST00000593074 OR4K2Q8NGD2 314 aa19.68■□□□□ 0.74
CLIP3-206ENST00000593074 TRMOQ9BU70 441 aa19.68■□□□□ 0.74
CLIP3-206ENST00000593074 GSTO2Q9H4Y5 243 aa19.68■□□□□ 0.74
CLIP3-206ENST00000593074 IL21Q9HBE4 155 aa19.68■□□□□ 0.74
CLIP3-206ENST00000593074 ASB3Q9Y575 518 aa19.68■□□□□ 0.74
CLIP3-206ENST00000593074 OBSL1O75147 1896 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms