RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	CLNK	Q7Z7G1	428 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	OR13J1	Q8NGT2	312 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	SMG7	Q92540	1137 aa	Known RBP	15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	NSL1	Q96IY1	281 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	CATSPER2	Q96P56	530 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	GDF15	Q99988	308 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	TDRD1	Q9BXT4	1180 aa	Known RBP	15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	LMAN2L	Q9H0V9	348 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	LINC00597	Q9H2U6	94 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	SCUBE2	Q9NQ36	999 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	KIAA1522	Q9P206	1035 aa	Predicted RBP	15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	ZMYM5	Q9UJ78	669 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	FCF1	Q9Y324	198 aa	Known RBP	15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	C5orf42	Q9H799	3197 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	PRRC2B	Q5JSZ5	2229 aa	Known RBP	15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318		K7ERQ8	282 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	TM9SF1	O15321	606 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	GYG2	O15488	501 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	PFDN1	O60925	122 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	SIN3B	O75182	1162 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	TBX10	O75333	385 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	PAPSS2	O95340	614 aa	Predicted RBP	15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	NDST3	O95803	873 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	CES1	P23141	567 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	CRABP2	P29373	138 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	HLA-F	P30511	346 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	RAP1GDS1	P52306	607 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	PLK1	P53350	603 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	LIMK2	P53671	638 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	XIAP	P98170	497 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	NSUN2	Q08J23	767 aa	Known RBP eCLIP	15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	TMED1	Q13445	227 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	FAM91A1	Q658Y4	838 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	PPP2R2D	Q66LE6	453 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	ASTL	Q6HA08	431 aa	Predicted RBP	15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	LVRN	Q6Q4G3	990 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	TMC5	Q6UXY8	1006 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	NAT14	Q8WUY8	206 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	ISL2	Q96A47	359 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	ACD	Q96AP0	544 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	LRRC3B	Q96PB8	259 aa		15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	C2orf49	Q9BVC5	232 aa	Predicted RBP	15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	G3BP2	Q9UN86	482 aa	Known RBP	15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	MRPS23	Q9Y3D9	190 aa	Known RBP	15.45	■□□□□ 0.06
DDX39A-209	ENST00000589318	MYO9B	Q13459	2157 aa		15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	SMAD6	O43541	496 aa	Known RBP	15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	MAGEC1	O60732	1142 aa		15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	CBX6	O95503	412 aa		15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	CYBB	P04839	570 aa		15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	DHRS4L1	P0CG22	281 aa		15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	GABRB3	P28472	473 aa		15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	CSE1L	P55060	971 aa	Known RBP	15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	CTC1	Q2NKJ3	1217 aa		15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	NCEH1	Q6PIU2	408 aa		15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	ACAD11	Q709F0	780 aa		15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	ADGRG6	Q86SQ4	1221 aa		15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	TRIM42	Q8IWZ5	723 aa		15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	SRPK1	Q96SB4	655 aa	Known RBP	15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	PTTG2	Q9NZH5	202 aa		15.44	■□□□□ 0.06
DDX39A-209	ENST00000589318	TPP1	O14773	563 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	HGS	O14964	777 aa	Predicted RBP	15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	KRT36	O76013	467 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	HAUS5	O94927	633 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	MAGEA12	P43365	314 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	ABCG1	P45844	678 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	CD151	P48509	253 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	FSTL4	Q6MZW2	842 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	ELMSAN1	Q6PJG2	1045 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	MYLK4	Q86YV6	388 aa	Predicted RBP	15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	IRF7	Q92985	503 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	PTCD3	Q96EY7	689 aa	Known RBP	15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	MIPEP	Q99797	713 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	GPAM	Q9HCL2	828 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	SPHK2	Q9NRA0	654 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	ABCB8	Q9NUT2	735 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	TXNDC16	Q9P2K2	825 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	ITGB1BP2	Q9UKP3	347 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	WDR37	Q9Y2I8	494 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	MTO1	Q9Y2Z2	717 aa	Known RBP	15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	ARIH1	Q9Y4X5	557 aa	Predicted RBP	15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	KCTD3	Q9Y597	815 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	PCDHGC4	Q9Y5F7	938 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	COPE	O14579	308 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	ZNF821	O75541	412 aa	Predicted RBP	15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	TOP3B	O95985	862 aa	Known RBP	15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	PIRT	P0C851	137 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	CPA3	P15088	417 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	PAM	P19021	973 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	SPR	P35270	261 aa	Predicted RBP	15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	ARSD	P51689	593 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	RHOA	P61586	193 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	AP2B1	P63010	937 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	ACVR1	Q04771	509 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	TRAF2	Q12933	501 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	PITRM1	Q5JRX3	1037 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	RETSAT	Q6NUM9	610 aa		15.43	■□□□□ 0.06
DDX39A-209	ENST00000589318	ZC3HC1	Q86WB0	502 aa	Known RBP	15.43	■□□□□ 0.06

Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms