RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 XPR1Q9UBH6 696 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 APOBEC2Q9Y235 224 aaKnown RBP14.2□□□□□ -0.14
LIG3-205ENST00000585941 HS3ST2Q9Y278 367 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 PKP3Q9Y446 797 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 PCDHB9Q9Y5E1 797 aa14.2□□□□□ -0.14
LIG3-205ENST00000585941 NOTCH4Q99466 2003 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 SLCO1B7G3V0H7 640 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 HTRA2O43464 458 aaPredicted RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 BUD23O43709 281 aaKnown RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 NDUFS3O75489 264 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 LYPLA1O75608 230 aaPredicted RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 WISP3O95389 354 aaPredicted RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 SBK3P0C264 359 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 CCDC166P0CW27 439 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 KITP10721 976 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 EPCAMP16422 314 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 ATP5F1P24539 256 aaPredicted RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 CD70P32970 193 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 ABL2P42684 1182 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 GLRBP48167 497 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 SNRPD1P62314 119 aaKnown RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 CAMK1Q14012 370 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 RCN2Q14257 317 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 CSHL1Q14406 222 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 ZNF460Q14592 562 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 PITRM1Q5JRX3 1037 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 PRSS36Q5K4E3 855 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 ATXN7L2Q5T6C5 722 aaPredicted RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 PIWIL4Q7Z3Z4 852 aaKnown RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 EFHBQ8N7U6 833 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 STON2Q8WXE9 905 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 RAB3IPQ96QF0 476 aaPredicted RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 TUBGCP5Q96RT8 1024 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 AARSD1Q9BTE6 412 aaKnown RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 GATA5Q9BWX5 397 aaPredicted RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 SLC2A11Q9BYW1 496 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 CEP44Q9C0F1 390 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 ILKAPQ9H0C8 392 aaPredicted RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 SMG9Q9H0W8 520 aaKnown RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 ARHGEF3Q9NR81 526 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 MARCOQ9UEW3 520 aaPredicted RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 LNPEPQ9UIQ6 1025 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 SLC25A13Q9UJS0 675 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 CCL26Q9Y258 94 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.19□□□□□ -0.14
LIG3-205ENST00000585941 RAP2CQ9Y3L5 183 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 ZNF711Q9Y462 761 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 COMMD10Q9Y6G5 202 aa14.19□□□□□ -0.14
LIG3-205ENST00000585941 MKI67P46013 3256 aaKnown RBP14.18□□□□□ -0.14
LIG3-205ENST00000585941 F8W8V4 182 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 NRG2O14511 850 aaPredicted RBP14.18□□□□□ -0.14
LIG3-205ENST00000585941 NPHS1O60500 1241 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 SYN1P17600 705 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 CD9P21926 228 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 SERPINA4P29622 427 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 IRS1P35568 1242 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 HMGCLP35914 325 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 DLG1Q12959 904 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 USP4Q13107 963 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 PTPRCAPQ14761 206 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 ZNF77Q15935 545 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 TECRLQ5HYJ1 363 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 LDB1Q86U70 411 aaPredicted RBP14.18□□□□□ -0.14
LIG3-205ENST00000585941 SLC22A9Q8IVM8 553 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 KIRREL3Q8IZU9 778 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.18□□□□□ -0.14
LIG3-205ENST00000585941 OR2AP1Q8NGE2 309 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 PIH1D2Q8WWB5 315 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 IRF7Q92985 503 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.18□□□□□ -0.14
LIG3-205ENST00000585941 RILPQ96NA2 401 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 TMEM237Q96Q45 408 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 TM6SF2Q9BZW4 377 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 LRMDAQ9H2I8 198 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 SYTL2Q9HCH5 934 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 SLC40A1Q9NP59 571 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 NCKIPSDQ9NZQ3 722 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 HAO1Q9UJM8 370 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 INTS6Q9UL03 887 aaKnown RBP14.18□□□□□ -0.14
LIG3-205ENST00000585941 CRYL1Q9Y2S2 319 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 GBF1Q92538 1859 aa14.18□□□□□ -0.14
LIG3-205ENST00000585941 A0A1W2PQ67 120 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 K7ERQ8 282 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 FCHO1O14526 889 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 SMAD6O43541 496 aaKnown RBP14.17□□□□□ -0.14
LIG3-205ENST00000585941 DLX3O60479 287 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 RASSF9O75901 435 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 CSPG5O95196 566 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 SERPINA6P08185 405 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 NQO1P15559 274 aaKnown RBP14.17□□□□□ -0.14
LIG3-205ENST00000585941 WEE1P30291 646 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 SLC8A1P32418 973 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 PPARGP37231 505 aaPredicted RBP14.17□□□□□ -0.14
LIG3-205ENST00000585941 CDKN2DP55273 166 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 PFKPQ01813 784 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 PRKAA1Q13131 559 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 SEMA3AQ14563 771 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 CTC1Q2NKJ3 1217 aa14.17□□□□□ -0.14
LIG3-205ENST00000585941 CFAP157Q5JU67 520 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms