RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	KLHL4	Q9C0H6	718 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SEMA6A	Q9H2E6	1030 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PDP2	Q9P2J9	529 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	HEMK1	Q9Y5R4	338 aa	Predicted RBP	11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ANKRD12	Q6UB98	2062 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063		F8W810	466 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	GCAT	O75600	419 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	IGHA2	P01877	340 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	COX4I1	P13073	169 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	AOC1	P19801	751 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	FGFR3	P22607	806 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	S100A1	P23297	94 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	MZF1	P28698	734 aa	Predicted RBP	11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	FOLH1	Q04609	750 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	CSTF3	Q12996	717 aa	Known RBP	11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	PDK3	Q15120	406 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ZNF124	Q15973	351 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	ALDH16A1	Q8IZ83	802 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	EDEM1	Q92611	657 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	GAS2L1	Q99501	681 aa	Predicted RBP	11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	RHBG	Q9H310	441 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SYNDIG1	Q9H7V2	258 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	HMX1	Q9NP08	348 aa	Predicted RBP	11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SLC39A10	Q9ULF5	831 aa		11.65	□□□□□ -0.54
CDK5RAP3-231	ENST00000584063	SERPINE1	P05121	402 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	HDC	P19113	662 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	IFRD2	Q12894	506 aa	Predicted RBP	11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	DYNC1I2	Q13409	638 aa	Known RBP	11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TLR1	Q15399	786 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	AARD	Q4LEZ3	155 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	SLC44A4	Q53GD3	710 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CMPK2	Q5EBM0	449 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	C6orf52	Q5T4I8	152 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	NPW	Q8N729	165 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	DDI1	Q8WTU0	396 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CENPI	Q92674	756 aa	Predicted RBP	11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TMA16	Q96EY4	203 aa	Known RBP	11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	GRIP2	Q9C0E4	1043 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CHRAC1	Q9NRG0	131 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	FZD10	Q9ULW2	581 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063		A0A0A0MRY4	1105 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063		H0Y626	953 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	PIR	O00625	290 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	GSTA2	P09210	222 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	XRCC1	P18887	633 aa	Predicted RBP	11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	RPL10	P27635	214 aa	Known RBP	11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	PML	P29590	882 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CDK7	P50613	346 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	BCAT1	P54687	386 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	SEMA5A	Q13591	1074 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	PDK1	Q15118	436 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	FSTL4	Q6MZW2	842 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ZNF704	Q6ZNC4	412 aa	Predicted RBP	11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	NUP54	Q7Z3B4	507 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ZNF619	Q8N2I2	560 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	SLC7A14	Q8TBB6	771 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CELF6	Q96J87	481 aa	Known RBP	11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ZNF560	Q96MR9	790 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	SPATA13	Q96N96	652 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	OLFM3	Q96PB7	478 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	NDN	Q99608	321 aa		11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	KLHL8	Q9P2G9	620 aa	Predicted RBP	11.64	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063		A0A096LPK6	155 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	YJEFN3	A6XGL0	299 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063		A8MVJ9	347 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	UBXN8	O00124	270 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ZNF195	O14628	629 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	SOCS5	O75159	536 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	GLRA3	O75311	464 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	FYN	P06241	537 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TSHR	P16473	764 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	GRK4	P32298	578 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	PTPN9	P43378	593 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	THOP1	P52888	689 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	KLF10	Q13118	480 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	LPIN1	Q14693	890 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	PCBP1	Q15365	356 aa	Known RBP eCLIP	11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	NRF1	Q16656	503 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063		Q3ZCU0	254 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	AGMO	Q6ZNB7	445 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	MARK2	Q7KZI7	788 aa	Known RBP	11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	SLC22A9	Q8IVM8	553 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ST13P4	Q8IZP2	240 aa	Predicted RBP	11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	LRRC52	Q8N7C0	313 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CCNYL1	Q8N7R7	359 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	TDRD5	Q8NAT2	981 aa	Known RBP	11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	B3GALNT2	Q8NCR0	500 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	C3orf58	Q8NDZ4	430 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	RCN3	Q96D15	328 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ZNF700	Q9H0M5	742 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	MRPL40	Q9NQ50	206 aa	Known RBP	11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	IARS2	Q9NSE4	1012 aa	Known RBP	11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	HACD3	Q9P035	362 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	PTCH2	Q9Y6C5	1203 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063		H3BUI4	141 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	UQCRB	P14927	111 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	CFL1	P23528	166 aa	Known RBP	11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	MAPK1	P28482	360 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	ARL4A	P40617	200 aa		11.63	□□□□□ -0.55
CDK5RAP3-231	ENST00000584063	MAGEA6	P43360	314 aa		11.63	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms