RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 TAS2R42Q7RTR8 314 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 ZC3HC1Q86WB0 502 aaKnown RBP9.31□□□□□ -0.92
SS18-220ENST00000582092 SLC41A1Q8IVJ1 513 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 CNTN4Q8IWV2 1026 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 APCDD1Q8J025 514 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 OR4L1Q8NH43 312 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 SMARCD2Q92925 531 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 IRF7Q92985 503 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 ZNF419Q96HQ0 510 aaPredicted RBP9.31□□□□□ -0.92
SS18-220ENST00000582092 NELL2Q99435 816 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 KXD1Q9BQD3 176 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 TRMT61BQ9BVS5 477 aaKnown RBP9.31□□□□□ -0.92
SS18-220ENST00000582092 TM6SF2Q9BZW4 377 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 C12orf65Q9H3J6 166 aaKnown RBP9.31□□□□□ -0.92
SS18-220ENST00000582092 KDM4CQ9H3R0 1056 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 BRD9Q9H8M2 597 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 ARHGEF3Q9NR81 526 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 SPHK2Q9NRA0 654 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 FBXO6Q9NRD1 293 aaPredicted RBP9.31□□□□□ -0.92
SS18-220ENST00000582092 THG1LQ9NWX6 298 aaKnown RBP9.31□□□□□ -0.92
SS18-220ENST00000582092 MRPS17Q9Y2R5 130 aaKnown RBP9.31□□□□□ -0.92
SS18-220ENST00000582092 FCF1Q9Y324 198 aaKnown RBP9.31□□□□□ -0.92
SS18-220ENST00000582092 PCDHB9Q9Y5E1 797 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 ACTL7AQ9Y615 435 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 ARL5AQ9Y689 179 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 SLC30A1Q9Y6M5 507 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 USH1CQ9Y6N9 552 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 MUC3AQ02505 3323 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 ANAPC1Q9H1A4 1944 aa9.31□□□□□ -0.92
SS18-220ENST00000582092 CXorf51AA0A1B0GTR3 108 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 KLF11O14901 512 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 NARSO43776 548 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 GREM1O60565 184 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 PLIN3O60664 434 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 SIN3BO75182 1162 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 ZMPSTE24O75844 475 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 HAUS5O94927 633 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 ADH1CP00326 375 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 GOT2P00505 430 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 DHRS4L1P0CG22 281 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 PABPC1P11940 636 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 TYRP14679 529 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 PSMC3P17980 439 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 PLA2G5P39877 138 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 CCR2P41597 374 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 SLC1A2P43004 574 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 ABCG1P45844 678 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 GRIA4P48058 902 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 ARCN1P48444 511 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 CSNK1DP48730 415 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 RPL26P61254 145 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 ST8SIA6P61647 398 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 SLC5A9Q2M3M2 681 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 PLEKHG6Q3KR16 790 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 PPM1JQ5JR12 505 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 PITRM1Q5JRX3 1037 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 AARS2Q5JTZ9 985 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 CFAP157Q5JU67 520 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 ATXN7L2Q5T6C5 722 aaPredicted RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 FAM45BPQ6NSW5 357 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 TRPM8Q7Z2W7 1104 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 YTHDF3Q7Z739 585 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 CMC1Q7Z7K0 106 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 GALNT7Q86SF2 657 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 ARID3BQ8IVW6 561 aaPredicted RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 DENND6AQ8IWF6 608 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 RDH11Q8TC12 318 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 FAM45AQ8TCE6 357 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 DNASE1L2Q92874 299 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 THOC1Q96FV9 657 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 MYO19Q96H55 970 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 DNAJC1Q96KC8 554 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 TBATAQ96M53 351 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 ASB16Q96NS5 453 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 TDRD1Q9BXT4 1180 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 SLC2A11Q9BYW1 496 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 FAM96AQ9H5X1 160 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 ACTR5Q9H9F9 607 aaPredicted RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 CAB39LQ9H9S4 337 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 NMRAL1Q9HBL8 299 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 NPHS2Q9NP85 383 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 THAP1Q9NVV9 213 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 NLE1Q9NVX2 485 aaPredicted RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 DUS2Q9NX74 493 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 LHX3Q9UBR4 397 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 EVLQ9UI08 416 aaPredicted RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 CORO1CQ9ULV4 474 aaPredicted RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 CA14Q9ULX7 337 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 RPL26L1Q9UNX3 145 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 RRP15Q9Y3B9 282 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 MUC6Q6W4X9 2439 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 OBSL1O75147 1896 aa9.3□□□□□ -0.92
SS18-220ENST00000582092 ATXN2Q99700 1313 aaKnown RBP9.3□□□□□ -0.92
SS18-220ENST00000582092 A0A1W2PQ67 120 aa9.29□□□□□ -0.92
SS18-220ENST00000582092 UBA6A0AVT1 1052 aaPredicted RBP9.29□□□□□ -0.92
SS18-220ENST00000582092 HMX2A2RU54 273 aa9.29□□□□□ -0.92
SS18-220ENST00000582092 CCDC162PA2VCL2 907 aa9.29□□□□□ -0.92
SS18-220ENST00000582092 F8W8V4 182 aa9.29□□□□□ -0.92
SS18-220ENST00000582092 PHGDHO43175 533 aaKnown RBP9.29□□□□□ -0.92
SS18-220ENST00000582092 LDB2O43679 373 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms