RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	MYCLP1	P12525	358 aa	Predicted RBP	12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	GM2A	P17900	193 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	FECH	P22830	423 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	SLC10A2	Q12908	348 aa	Predicted RBP	12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	TARDBP	Q13148	414 aa	Known RBP eCLIP	12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	PEX6	Q13608	980 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	TFDP2	Q14188	446 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	CNGA3	Q16281	694 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	TAZ	Q16635	292 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	TMTC1	Q8IUR5	882 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	HID1	Q8IV36	788 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	RBFA	Q8N0V3	343 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	CCNY	Q8ND76	341 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	ARRDC2	Q8TBH0	407 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	FUBP1	Q96AE4	644 aa	Known RBP	12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	DEPDC7	Q96QD5	511 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	TDRD1	Q9BXT4	1180 aa	Known RBP	12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	TEX101	Q9BY14	249 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	ABCG4	Q9H172	646 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	PHPT1	Q9NRX4	125 aa	Predicted RBP	12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	DOLK	Q9UPQ8	538 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	OR1A2	Q9Y585	309 aa		12.6	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	TTC24	A2A3L6	582 aa	Predicted RBP	12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	RGSL1	A5PLK6	1076 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	FAM149A	A5PLN7	773 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	NPIPB15	A6NHN6	443 aa	Predicted RBP	12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	MTSS1	O43312	755 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	TCEA3	O75764	348 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	MT-CO3	P00414	261 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	KRT1	P04264	644 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	COMT	P21964	271 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	LHCGR	P22888	699 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	NOP2	P46087	812 aa	Known RBP	12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	ZNF75D	P51815	510 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	EPHB1	P54762	984 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	DEFB133	Q30KQ1	61 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	C11orf63	Q6NUN7	778 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	TECPR1	Q7Z6L1	1165 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	NRSN1	Q8IZ57	195 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	ARL10	Q8N8L6	244 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	PLA2G15	Q8NCC3	412 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	IFI44	Q8TCB0	444 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	OLFM3	Q96PB7	478 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	SRPK1	Q96SB4	655 aa	Known RBP	12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	ADGRE3	Q9BY15	652 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	CLPB	Q9H078	707 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	PCDH9	Q9HC56	1237 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	PNMA8B	Q9ULN7	279 aa	Predicted RBP	12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	PCDHA13	Q9Y5I0	950 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	HEY1	Q9Y5J3	304 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	ALG6	Q9Y672	507 aa		12.59	□□□□□ -0.39
CDK5RAP3-222	ENST00000581708	CAPN8	A6NHC0	703 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	BTNL10	A8MVZ5	291 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	TAF4	O00268	1085 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	JCHAIN	P01591	159 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	HLA-DQB2	P05538	268 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	PDHA1	P08559	390 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	CDKN2B	P42772	138 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	SEMG2	Q02383	582 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	DSC2	Q02487	901 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	CRTC1	Q6UUV9	634 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	ADAMTSL4	Q6UY14	1074 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	KDM7A	Q6ZMT4	941 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	SLC35F3	Q8IY50	421 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	KATNAL2	Q8IYT4	538 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	RCOR2	Q8IZ40	523 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	LSMEM2	Q8N112	164 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	MAPK15	Q8TD08	544 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	TSACC	Q96A04	125 aa	Predicted RBP	12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	LGMN	Q99538	433 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	CDH19	Q9H159	772 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	TCEAL2	Q9H3H9	227 aa	Predicted RBP	12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	TRNAU1AP	Q9NX07	287 aa	Known RBP	12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	PADI4	Q9UM07	663 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	EPN1	Q9Y6I3	576 aa	Predicted RBP	12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	LRP4	O75096	1905 aa		12.58	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	TMEM202	A6NGA9	273 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708		A8MX80	341 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	KCNK1	O00180	336 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	KRT37	O76014	449 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	ZRANB2	O95218	330 aa	Known RBP eCLIP	12.57	□□□□□ -0.4	7e-19	■□□□□ 10
CDK5RAP3-222	ENST00000581708	NDUFA10	O95299	355 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	MAP3K6	O95382	1288 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	PRL	P01236	227 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	PNLIP	P16233	465 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	TGM2	P21980	687 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	ETV3	P41162	512 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	STC1	P52823	247 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	COPS2	P61201	443 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	PTS	Q03393	145 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	CYP4F3	Q08477	520 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	NIPAL4	Q0D2K0	466 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	C1orf61	Q13536	156 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	CDKN3	Q16667	212 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	TFDP3	Q5H9I0	405 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	LRRC66	Q68CR7	880 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	GUSBP11	Q6P575	273 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	OGFOD3	Q6PK18	319 aa		12.57	□□□□□ -0.4
CDK5RAP3-222	ENST00000581708	MFSD7	Q6UXD7	560 aa		12.57	□□□□□ -0.4

Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms