RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 FZD4Q9ULV1 537 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 ARL5AQ9Y689 179 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 UNC80Q8N2C7 3258 aa10.75□□□□□ -0.69
SS18-213ENST00000579640 A0A1W2PP55 124 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 RGSL1A5PLK6 1076 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 AURKAO14965 403 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 TSPAN6O43657 245 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 RNASEH2AO75792 299 aaKnown RBP10.74□□□□□ -0.69
SS18-213ENST00000579640 RPP40O75818 363 aaKnown RBP10.74□□□□□ -0.69
SS18-213ENST00000579640 CLDN7O95471 211 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 NUDT17P0C025 328 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 GABRG2P18507 467 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 NDUFV2P19404 249 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 LHCGRP22888 699 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 PTPN5P54829 565 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 SLC29A2Q14542 456 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 CASP8Q14790 479 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 LONRF1Q17RB8 773 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 AGBL4Q5VU57 503 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 PDPK2PQ6A1A2 396 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 ESRP1Q6NXG1 681 aaKnown RBP10.74□□□□□ -0.69
SS18-213ENST00000579640 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.74□□□□□ -0.69
SS18-213ENST00000579640 MAMSTRQ6ZN01 415 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 CBARPQ8N350 705 aaPredicted RBP10.74□□□□□ -0.69
SS18-213ENST00000579640 FLCNQ8NFG4 579 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 OR4K2Q8NGD2 314 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 GANCQ8TET4 914 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 ERLEC1Q96DZ1 483 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 FCRL3Q96P31 734 aaPredicted RBP10.74□□□□□ -0.69
SS18-213ENST00000579640 CCDC77Q9BR77 488 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 PLAC1Q9HBJ0 212 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 POLR3BQ9NW08 1133 aaPredicted RBP10.74□□□□□ -0.69
SS18-213ENST00000579640 MOCS1Q9NZB8 636 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 PKD2L2Q9NZM6 624 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 FADS3Q9Y5Q0 445 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 TCRBV9S1A1TA0A576 114 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 H7C0S8 307 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 NEMP1O14524 444 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 ELFN1P0C7U0 828 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 STC1P52823 247 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 PRAMEP78395 509 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 RALGDSQ12967 914 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 STAT4Q14765 748 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 CNGA3Q16281 694 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 KLHL38Q2WGJ6 581 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 LRRC73Q5JTD7 316 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 CES3Q6UWW8 571 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 KIAA1324Q6UXG2 1013 aaKnown RBP10.74□□□□□ -0.69
SS18-213ENST00000579640 CAPN12Q6ZSI9 719 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 TSPAN33Q86UF1 283 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 CACUL1Q86Y37 369 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 LMNTD2Q8IXW0 634 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 CAMKK1Q8N5S9 505 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 OR13J1Q8NGT2 312 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 HMGB4Q8WW32 186 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 CDKL2Q92772 493 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 CERS2Q96G23 380 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 DNAJC1Q96KC8 554 aaKnown RBP10.74□□□□□ -0.69
SS18-213ENST00000579640 ZNF778Q96MU6 729 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 CYTH2Q99418 400 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 TRIM56Q9BRZ2 755 aaKnown RBP10.74□□□□□ -0.69
SS18-213ENST00000579640 CDH19Q9H159 772 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 KDM4CQ9H3R0 1056 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 ACSS3Q9H6R3 686 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 VIPAS39Q9H9C1 493 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 PPCSQ9HAB8 311 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 KCTD5Q9NXV2 234 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 BCCIPQ9P287 314 aaKnown RBP eCLIP10.74□□□□□ -0.69
SS18-213ENST00000579640 KCTD3Q9Y597 815 aa10.74□□□□□ -0.69
SS18-213ENST00000579640 CCDC78A2IDD5 438 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 PLK4O00444 970 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 SPINT1O43278 529 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 PLRG1O43660 514 aaKnown RBP10.73□□□□□ -0.69
SS18-213ENST00000579640 APBB3O95704 486 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 SLC4A1P02730 911 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 ARCN1P48444 511 aaKnown RBP10.73□□□□□ -0.69
SS18-213ENST00000579640 CCR3P51677 355 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 EIF3BP55884 814 aaKnown RBP10.73□□□□□ -0.69
SS18-213ENST00000579640 PTSQ03393 145 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 MGAT5Q09328 741 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 NAB1Q13506 487 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 PTPRRQ15256 657 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 ALS2CLQ60I27 953 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 CWF19L1Q69YN2 538 aaKnown RBP10.73□□□□□ -0.69
SS18-213ENST00000579640 AFTPHQ6ULP2 937 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 LIPIQ6XZB0 460 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 KCNMB4Q86W47 210 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 NRSN1Q8IZ57 195 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 CNPY4Q8N129 248 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 PGBD3Q8N328 593 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 OR13C4Q8NGS5 318 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 CALML6Q8TD86 181 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 DTX3LQ8TDB6 740 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 CXorf40AQ8TE69 158 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 FBF1Q8TES7 1133 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 EID2BQ96D98 161 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 CDKN2AIPNLQ96HQ2 116 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 SGSM3Q96HU1 749 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 SLC6A17Q9H1V8 727 aa10.73□□□□□ -0.69
SS18-213ENST00000579640 ITM2CQ9NQX7 267 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms