RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 ASPSCR1Q9BZE9 553 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 LHPPQ9H008 270 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 RAB6CQ9H0N0 254 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 EML4Q9HC35 981 aaKnown RBP9.6□□□□□ -0.87
CCDC40-212ENST00000574799 OXSMQ9NWU1 459 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 DUS2Q9NX74 493 aaKnown RBP9.6□□□□□ -0.87
CCDC40-212ENST00000574799 MOCS1Q9NZB8 636 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 ANAPC2Q9UJX6 822 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 VPS28Q9UK41 221 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 VANGL2Q9ULK5 521 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 ITM2BQ9Y287 266 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 SLC45A1Q9Y2W3 748 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 PCDHGA7Q9Y5G6 932 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 MYO18AQ92614 2054 aaKnown RBP9.6□□□□□ -0.87
CCDC40-212ENST00000574799 BCLAF3A2AJT9 711 aaKnown RBP9.6□□□□□ -0.87
CCDC40-212ENST00000574799 TBKBP1A7MCY6 615 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 B4GALT4O60513 344 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 TPSB2P20231 275 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 HOXA11P31270 313 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-212ENST00000574799 S100A5P33763 92 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 MPP1Q00013 466 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 PLIN5Q00G26 463 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 PTPN11Q06124 597 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-212ENST00000574799 NFYCQ13952 458 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 TPSAB1Q15661 275 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 BCL2A1Q16548 175 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 UGT3A1Q6NUS8 523 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 ZNF773Q6PK81 442 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 PQLC3Q8N755 202 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 ANKRD52Q8NB46 1076 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 MINDY2Q8NBR6 621 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 LILRB4Q8NHJ6 448 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 ZFP90Q8TF47 636 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 CPB2Q96IY4 423 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 CEP19Q96LK0 163 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 MUS81Q96NY9 551 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 RBBP8Q99708 897 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 TRIM8Q9BZR9 551 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 HPS4Q9NQG7 708 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 UBP1Q9NZI7 540 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 B3GNT3Q9Y2A9 372 aa9.6□□□□□ -0.87
CCDC40-212ENST00000574799 MTF2Q9Y483 593 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-212ENST00000574799 ARIH1Q9Y4X5 557 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-212ENST00000574799 INO80B-WBP1J3KQ70 363 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 OGTO15294 1046 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 MICAL2O94851 1124 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 CAPN1P07384 714 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 CDH1P12830 882 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 LIMK2P53671 638 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 DEFA1P59665 94 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 DEFA3P59666 94 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 FRG1Q14331 258 aaKnown RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 RFTN1Q14699 578 aaPredicted RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 CLPPQ16740 277 aaPredicted RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 CA9Q16790 459 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 SLC10A6Q3KNW5 377 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 FAM160B1Q5W0V3 765 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 HMBOX1Q6NT76 420 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 PLEKHG7Q6ZR37 379 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 ILDR2Q71H61 639 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 PACRGLQ8N7B6 248 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 ANKFN1Q8N957 763 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 USP33Q8TEY7 942 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 OSCP1Q8WVF1 389 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 VPS33AQ96AX1 596 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 ZNF486Q96H40 463 aaPredicted RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 DMRTB1Q96MA1 342 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 KCTD14Q9BQ13 255 aaPredicted RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 PLEKHA5Q9HAU0 1116 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 TRPV5Q9NQA5 729 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 NRBP2Q9NSY0 501 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 ANKMY1Q9P2S6 941 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 RAD54BQ9Y620 910 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 FRMPD3Q5JV73 1810 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 A0A0A0MRY4 1105 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 CENPXA8MT69 81 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 GSTA4O15217 222 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 SLC22A2O15244 555 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 VTNP04004 478 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 HLCSP50747 726 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 RPS3AP61247 264 aaKnown RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 IL5RAQ01344 420 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 NAB1Q13506 487 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 OLIG2Q13516 323 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 CSHL1Q14406 222 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 SPANXN3Q5MJ09 141 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 MPZL3Q6UWV2 235 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 GPR142Q7Z601 462 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 FAM35AQ86V20 835 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 PNPT1Q8TCS8 783 aaKnown RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 AFG1LQ8WV93 481 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 MFSD3Q96ES6 412 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 RPL10LQ96L21 214 aaKnown RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 SPATA13Q96N96 652 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 FUNDC2Q9BWH2 189 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 MRPL4Q9BYD3 311 aaKnown RBP9.59□□□□□ -0.87
CCDC40-212ENST00000574799 ADAMTS10Q9H324 1103 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 CHRAC1Q9NRG0 131 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 NDUFAF1Q9Y375 327 aa9.59□□□□□ -0.87
CCDC40-212ENST00000574799 ZSCAN5BA6NJL1 495 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms