RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 RNF215Q9Y6U7 377 aa6.74□□□□□ -1.33
VPS53-213ENST00000572334 FLNCQ14315 2725 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 UBR5O95071 2799 aaPredicted RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 A0A0U1RQS6 177 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 PRSS38A1L453 326 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 ARHGAP42A6NI28 874 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 A8MX80 341 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 EIF3CLB5ME19 914 aaKnown RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 C9orf172C9J069 976 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 PYCARD-AS1I3L0S3 204 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 TNFRSF10CO14798 259 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 MAFKO60675 156 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 SOD1P00441 154 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 TNFP01375 233 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 FTLP02792 175 aaPredicted RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 CEACAM5P06731 702 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 GZMAP12544 262 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 PNLIPP16233 465 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 GLB1P16278 677 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 TNFAIP3P21580 790 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 XPAP23025 273 aaPredicted RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 AMPD1P23109 780 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 HTR1BP28222 390 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 SERPINA4P29622 427 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 SCNN1BP51168 640 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 INHBCP55103 352 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 TRAF2Q12933 501 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 GPS2Q13227 327 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 RFTN1Q14699 578 aaPredicted RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 NR1D2Q14995 579 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 C16orf72Q14CZ0 275 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 DPYSL2Q16555 572 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 STX1AQ16623 288 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 C14orf28Q4W4Y0 310 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 SPECC1LQ69YQ0 1117 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 ERAP2Q6P179 960 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 PNCKQ6P2M8 343 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 RFLNAQ6ZTI6 216 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 RAB11FIP2Q7L804 512 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 ZNF438Q7Z4V0 828 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 HSD11B1LQ7Z5J1 315 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 POLNQ7Z5Q5 900 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 TSPAN33Q86UF1 283 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 DTX1Q86Y01 620 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 CCNJLQ8IV13 435 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 PSTKQ8IV42 348 aaKnown RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 FBXO39Q8N4B4 442 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 ARL14Q8N4G2 192 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 AOPEPQ8N6M6 819 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 Q8N9G6 341 aaPredicted RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 GPBAR1Q8TDU6 330 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 PATE1Q8WXA2 126 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 PMEPA1Q969W9 287 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 PCMTD1Q96MG8 357 aaPredicted RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 GFM1Q96RP9 751 aaKnown RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 CCNL2Q96S94 520 aaPredicted RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 EIF3CQ99613 913 aaKnown RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 CINPQ9BW66 212 aaPredicted RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 TEX101Q9BY14 249 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 FRMD8Q9BZ67 464 aaPredicted RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 SEMA6CQ9H3T2 930 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 SYNDIG1Q9H7V2 258 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 NOD2Q9HC29 1040 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 EPB41L5Q9HCM4 733 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 CYP4F12Q9HCS2 524 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 SPATS2LQ9NUQ6 558 aaKnown RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 PARVAQ9NVD7 372 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 AIPL1Q9NZN9 384 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 FOXJ2Q9P0K8 574 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 MYO6Q9UM54 1294 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 DOLKQ9UPQ8 538 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 PPIL1Q9Y3C6 166 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 PCDHGC4Q9Y5F7 938 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 PCYT1BQ9Y5K3 369 aaPredicted RBP6.73□□□□□ -1.33
VPS53-213ENST00000572334 COL12A1Q99715 3063 aa6.73□□□□□ -1.33
VPS53-213ENST00000572334 PRAMEF33A0A0G2JMD5 474 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 ANKRD62A6NC57 917 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 NPIPB15A6NHN6 443 aaPredicted RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 B4DGG1 531 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 B8ZZF3 427 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 J3QKU1 62 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 AGRPO00253 132 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 DFFAO00273 331 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 NVLO15381 856 aaKnown RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 NUDT21O43809 227 aaKnown RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 FZD6O60353 706 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 PRAMEF10O60809 474 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 HEXIM1O94992 359 aaKnown RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 TUBB4AP04350 444 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 FGF1P05230 155 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 ELFN1P0C7U0 828 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 RARAP10276 462 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 MYCLP1P12525 358 aaPredicted RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 SKILP12757 684 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 CCNB1P14635 433 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 ITGB6P18564 788 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 IL4RP24394 825 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 AK4P27144 223 aaPredicted RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 MAZP56270 477 aaKnown RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 OR1D5P58170 312 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms