RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ALDOCP09972 364 aaKnown RBP22.8■■□□□ 1.24
VPS53-211ENST00000571805 ACVRL1P37023 503 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 PBX3P40426 434 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 HSPA13P48723 471 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 ACADVLP49748 655 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 SH3BP2P78314 561 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 MYBPC1Q00872 1141 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 CLLU1OSQ5K130 101 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 C6orf52Q5T4I8 152 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 HACD2Q6Y1H2 254 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 MIB1Q86YT6 1006 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 COLGALT2Q8IYK4 626 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 NAT14Q8WUY8 206 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 SLCO4A1Q96BD0 722 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 C19orf60Q96EN9 201 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 DNAJC1Q96KC8 554 aaKnown RBP22.8■■□□□ 1.24
VPS53-211ENST00000571805 CNBD2Q96M20 576 aa22.8■■□□□ 1.24
VPS53-211ENST00000571805 TRMT13Q9NUP7 481 aaKnown RBP22.8■■□□□ 1.24
VPS53-211ENST00000571805 MTPAPQ9NVV4 582 aaKnown RBP eCLIP22.8■■□□□ 1.24
VPS53-211ENST00000571805 TMEM189-UBE2V1I3L0A0 370 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 CD3EAPO15446 510 aaKnown RBP22.79■■□□□ 1.24
VPS53-211ENST00000571805 TRPA1O75762 1119 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 GLP2RO95838 553 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 SLC4A1P02730 911 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 MYCNP04198 464 aaPredicted RBP22.79■■□□□ 1.24
VPS53-211ENST00000571805 TFAP2AP05549 437 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 CLCN2P51788 898 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 CDH13P55290 713 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 PARP15Q460N3 678 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 GLB1LQ6UWU2 654 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 CLYBLQ8N0X4 340 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 AHI1Q8N157 1196 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 KLHDC9Q8NEP7 349 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 MYEOVQ96EZ4 313 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 DUS3LQ96G46 650 aaKnown RBP22.79■■□□□ 1.24
VPS53-211ENST00000571805 PRICKLE1Q96MT3 831 aaPredicted RBP22.79■■□□□ 1.24
VPS53-211ENST00000571805 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP22.79■■□□□ 1.24
VPS53-211ENST00000571805 CROTQ9UKG9 612 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 LZTS1Q9Y250 596 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 PCDHB5Q9Y5E4 795 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 GPX3P22352 226 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 MAGEA11P43364 429 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 SUOXP51687 545 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 C11orf91Q3C1V1 193 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 EP400NLQ6ZTU2 488 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 ATAD1Q8NBU5 361 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 PEX13Q92968 403 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 FEM1CQ96JP0 617 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 ZFYVE28Q9HCC9 887 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 DNAJC15Q9Y5T4 150 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 COMMD3-BMI1R4GMX3 469 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 FRMPD3Q5JV73 1810 aa22.79■■□□□ 1.24
VPS53-211ENST00000571805 TCRBV3S1A0A5B6 114 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 CCDC162PA2VCL2 907 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 PPP6CO00743 305 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 OR6B1O95007 311 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 GPR162Q16538 588 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 C6orf10Q5SRN2 563 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 CCSAPQ6IQ19 270 aaPredicted RBP22.78■■□□□ 1.24
VPS53-211ENST00000571805 BLOC1S5Q8TDH9 187 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 RPRD1AQ96P16 312 aaPredicted RBP22.78■■□□□ 1.24
VPS53-211ENST00000571805 SLC2A11Q9BYW1 496 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 POLR1EQ9GZS1 481 aaKnown RBP22.78■■□□□ 1.24
VPS53-211ENST00000571805 ZNF696Q9H7X3 374 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 AKTIPQ9H8T0 292 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 NDUFA13Q9P0J0 144 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 GABRQQ9UN88 632 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 CDK14O94921 469 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 IGLV3-27P01718 113 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 HMBSP08397 361 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 FGF4P08620 206 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 MTHFD2P13995 350 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 OR1G1P47890 313 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 CRHR2Q13324 411 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 OR4D1Q15615 310 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 VARS2Q5ST30 1063 aaKnown RBP22.78■■□□□ 1.24
VPS53-211ENST00000571805 LAYNQ6UX15 382 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 ISLR2Q6UXK2 745 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 PTGR2Q8N8N7 351 aaPredicted RBP22.78■■□□□ 1.24
VPS53-211ENST00000571805 MARCH2Q9P0N8 246 aa22.78■■□□□ 1.24
VPS53-211ENST00000571805 VWA8A3KMH1 1905 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 PRAMEF11O60813 436 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 FGF1P05230 155 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 ETS2P15036 469 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 HLA-DPA1P20036 260 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 RPL5P46777 297 aaKnown RBP22.77■■□□□ 1.24
VPS53-211ENST00000571805 ILF2Q12905 390 aaKnown RBP22.77■■□□□ 1.24
VPS53-211ENST00000571805 BTG3Q14201 252 aaPredicted RBP22.77■■□□□ 1.24
VPS53-211ENST00000571805 OR13C4Q8NGS5 318 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 LRTOMTQ8WZ04 291 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 POPDC3Q9HBV1 291 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 PRG3Q9Y2Y8 225 aaPredicted RBP22.77■■□□□ 1.24
VPS53-211ENST00000571805 RPP40O75818 363 aaKnown RBP22.77■■□□□ 1.24
VPS53-211ENST00000571805 SOAT2O75908 522 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 SIX3O95343 332 aaPredicted RBP22.77■■□□□ 1.24
VPS53-211ENST00000571805 EOMESO95936 686 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 EPOP01588 193 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 ZNF37AP17032 561 aaPredicted RBP22.77■■□□□ 1.24
VPS53-211ENST00000571805 OR1E1P30953 314 aa22.77■■□□□ 1.24
VPS53-211ENST00000571805 YBEYP58557 167 aaPredicted RBP22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms