RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 BANF1O75531 89 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 RECQL5O94762 991 aaPredicted RBP9.29□□□□□ -0.92
VPS35-211ENST00000569950 WNT1P04628 370 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 CNR2P34972 360 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 IGFALSP35858 605 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 HMGCLP35914 325 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 ETV3P41162 512 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 NBL1P41271 181 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 ITGA8P53708 1063 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 TERF1P54274 439 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 DRG2P55039 364 aaKnown RBP9.29□□□□□ -0.92
VPS35-211ENST00000569950 POLR2LP62875 67 aaKnown RBP9.29□□□□□ -0.92
VPS35-211ENST00000569950 CRADDP78560 199 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 CDK16Q00536 496 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 RPL6Q02878 288 aaKnown RBP9.29□□□□□ -0.92
VPS35-211ENST00000569950 ACVR1Q04771 509 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 ELP6Q0PNE2 266 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 PRPSAP1Q14558 356 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 WSCD2Q2TBF2 565 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 FNBP1LQ5T0N5 605 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 IZUMO3Q5VZ72 239 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 KCTD16Q68DU8 428 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 NAPEPLDQ6IQ20 393 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 KIAA1161Q6NSJ0 714 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 LRRC8BQ6P9F7 803 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 GCNT7Q6ZNI0 430 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 Q6ZVL8 140 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 IGDCC3Q8IVU1 814 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 PPIL6Q8IXY8 311 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 PLA2G15Q8NCC3 412 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 GPR26Q8NDV2 337 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 GANCQ8TET4 914 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 KLK6Q92876 244 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 RMDN1Q96DB5 314 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 DTD2Q96FN9 168 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 IFT43Q96FT9 208 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 BMFQ96LC9 184 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 HSPA12BQ96MM6 686 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 SERPINB12Q96P63 405 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 PPP1R2P1Q96PQ5 205 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 PHOX2BQ99453 314 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 AGAP2Q99490 1192 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 FSD1LQ9BXM9 530 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 ADGRE3Q9BY15 652 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 TRIM31Q9BZY9 425 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 DPH5Q9H2P9 285 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 DYRK4Q9NR20 520 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 MBNL1Q9NR56 388 aaKnown RBP9.29□□□□□ -0.92
VPS35-211ENST00000569950 FAM86C1Q9NVL1 165 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 HAUS2Q9NVX0 235 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 NFKBIL1Q9UBC1 381 aaPredicted RBP9.29□□□□□ -0.92
VPS35-211ENST00000569950 ASIC3Q9UHC3 531 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 PNMA8BQ9ULN7 279 aaPredicted RBP9.29□□□□□ -0.92
VPS35-211ENST00000569950 NCKAP1Q9Y2A7 1128 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 ARL5AQ9Y689 179 aa9.29□□□□□ -0.92
VPS35-211ENST00000569950 ZFC3H1O60293 1989 aaKnown RBP9.29□□□□□ -0.92
VPS35-211ENST00000569950 CFAP54Q96N23 3096 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 TBC1D3DA0A087WVF3 549 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 TBC1D3IA0A087WXS9 549 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 TBC1D3EA0A087X179 549 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 TBC1D3KA0A087X1G2 549 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 C1orf232A0A0U1RR37 186 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 A0A1W2PPC4 97 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 A0A1W2PR77 199 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 TBC1D3FA6NER0 549 aaPredicted RBP9.28□□□□□ -0.92
VPS35-211ENST00000569950 POM121BA6NF01 834 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 FAM47DPA6NHR8 397 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 LRRC72A6NJI9 287 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 EFCAB8A8MWE9 144 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 TBC1D3LB9A6J9 549 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 E7ESA3 106 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 GOLGA8MH3BSY2 632 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 PSMD11O00231 422 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 PSMD3O43242 534 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 PCDH8O95206 1070 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 TBC1D3HP0C7X1 549 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 MLNP12872 115 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 ZNF30P17039 623 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 BPIP17213 487 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 CA4P22748 312 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 ITPKAP23677 461 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 MAOBP27338 520 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 ARNTP27540 789 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 MAT2AP31153 395 aaKnown RBP9.28□□□□□ -0.92
VPS35-211ENST00000569950 ADCY8P40145 1251 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 SPINT3P49223 89 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 ARSDP51689 593 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 RPS21P63220 83 aaKnown RBP9.28□□□□□ -0.92
VPS35-211ENST00000569950 XIAPP98170 497 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 CDH17Q12864 832 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 MORF4L2Q15014 288 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 CCDC38Q502W7 563 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 SPDYCQ5MJ68 293 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 UBAP2Q5T6F2 1119 aaKnown RBP9.28□□□□□ -0.92
VPS35-211ENST00000569950 HENMT1Q5T8I9 393 aaKnown RBP9.28□□□□□ -0.92
VPS35-211ENST00000569950 TBC1D3GQ6DHY5 549 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 TBC1D3CQ6IPX1 549 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 C8orf74Q6P047 294 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 SLC36A4Q6YBV0 504 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 USP45Q70EL2 814 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms