RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 AMFRQ9UKV5 643 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 SCML1Q9UN30 329 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 R3HDM2Q9Y2K5 976 aaKnown RBP13.96□□□□□ -0.17
CLN3-235ENST00000568497 PPP2R2CQ9Y2T4 447 aa13.96□□□□□ -0.17
CLN3-235ENST00000568497 C10orf142B7Z368 130 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 TLR4O00206 839 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 NEMP1O14524 444 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 SCAMP1O15126 338 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 PAK4O96013 591 aaPredicted RBP13.95□□□□□ -0.18
CLN3-235ENST00000568497 PDHA1P08559 390 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 ALPIP09923 528 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 CR2P20023 1033 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 NXPH1P58417 271 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 TCEA2Q15560 299 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 IFI16Q16666 785 aaKnown RBP13.95□□□□□ -0.18
CLN3-235ENST00000568497 TPRG1LQ5T0D9 272 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 CDCP2Q5VXM1 449 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 DENND2CQ68D51 928 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 RCOR2Q8IZ40 523 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 TAB3Q8N5C8 712 aaPredicted RBP13.95□□□□□ -0.18
CLN3-235ENST00000568497 MAML1Q92585 1016 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 OLFM3Q96PB7 478 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 PSKH2Q96QS6 385 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 MGME1Q9BQP7 344 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 OSBPL8Q9BZF1 889 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 ABCG4Q9H172 646 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 UBP1Q9NZI7 540 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.95□□□□□ -0.18
CLN3-235ENST00000568497 LCMT1Q9UIC8 334 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 PYCARDQ9ULZ3 195 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 SATB2Q9UPW6 733 aa13.95□□□□□ -0.18
CLN3-235ENST00000568497 TDRD6O60522 2096 aaKnown RBP13.95□□□□□ -0.18
CLN3-235ENST00000568497 USP27XA6NNY8 438 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 TRIM38O00635 465 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 MATN3O15232 486 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 SUV39H1O43463 412 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 OPA1O60313 960 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 CCNB1P14635 433 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 OTUD4Q01804 1114 aaKnown RBP13.94□□□□□ -0.18
CLN3-235ENST00000568497 TLE1Q04724 770 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 BCL2L1Q07817 233 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 PPIDQ08752 370 aaKnown RBP13.94□□□□□ -0.18
CLN3-235ENST00000568497 SFSWAPQ12872 951 aaKnown RBP13.94□□□□□ -0.18
CLN3-235ENST00000568497 NOMO1Q15155 1222 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 ZNF542PQ5EBM4 170 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 TFDP3Q5H9I0 405 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 FOXR1Q6PIV2 292 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 IGF2-ASQ6U949 168 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 MICALCLQ6ZW33 695 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 PRUNE1Q86TP1 453 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 TSPAN33Q86UF1 283 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 HORMAD1Q86X24 394 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 PLPP6Q8IY26 295 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 C17orf53Q8N3J3 647 aaPredicted RBP13.94□□□□□ -0.18
CLN3-235ENST00000568497 TEX26Q8N6G2 289 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 CCDC112Q8NEF3 446 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 EXD1Q8NHP7 514 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 SPATA22Q8NHS9 363 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 ARRDC2Q8TBH0 407 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 CASKIN2Q8WXE0 1202 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 TEP1Q99973 2627 aaKnown RBP13.94□□□□□ -0.18
CLN3-235ENST00000568497 MBNL1Q9NR56 388 aaKnown RBP13.94□□□□□ -0.18
CLN3-235ENST00000568497 STARD5Q9NSY2 213 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 DONSONQ9NYP3 566 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 TPX2Q9ULW0 747 aaKnown RBP13.94□□□□□ -0.18
CLN3-235ENST00000568497 CHKBQ9Y259 395 aa13.94□□□□□ -0.18
CLN3-235ENST00000568497 NOTCH2Q04721 2471 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 BOD1L1Q8NFC6 3051 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 TRAFD1O14545 582 aaPredicted RBP13.93□□□□□ -0.18
CLN3-235ENST00000568497 AREL1O15033 823 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 FFAR2O15552 330 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 MMP2P08253 660 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 CCDC175P0C221 793 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 PIRTP0C851 137 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 XPAP23025 273 aaPredicted RBP13.93□□□□□ -0.18
CLN3-235ENST00000568497 CCNCP24863 283 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 PTPN3P26045 913 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 CD86P42081 329 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 CCR5P51681 352 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 RWDD2BP57060 319 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 RAD51Q06609 339 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 RALGDSQ12967 914 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 OLIG2Q13516 323 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 PCSK7Q16549 785 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 CFAP58Q5T655 872 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 CCDC181Q5TID7 509 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 XKR5Q6UX68 686 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 PRPF39Q86UA1 669 aaKnown RBP13.93□□□□□ -0.18
CLN3-235ENST00000568497 SPATS2Q86XZ4 545 aaKnown RBP13.93□□□□□ -0.18
CLN3-235ENST00000568497 PELI3Q8N2H9 469 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 ACTL9Q8TC94 416 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 NSMCE1Q8WV22 266 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 ATG4AQ8WYN0 398 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 EXTL1Q92935 676 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 HDAC11Q96DB2 347 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 PPP1R16AQ96I34 528 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 ZNF599Q96NL3 588 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 TSGA13Q96PP4 275 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 NUDCD1Q96RS6 583 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 RBM15Q96T37 977 aaKnown RBP eCLIP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms