RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 PPP1R12AO14974 1030 aaPredicted RBP15.05■□□□□ -0
VPS39-210ENST00000568357 GCATO75600 419 aa15.05■□□□□ -0
VPS39-210ENST00000568357 MYF5P13349 255 aa15.05■□□□□ -0
VPS39-210ENST00000568357 CKMT2P17540 419 aa15.05■□□□□ -0
VPS39-210ENST00000568357 CTNNA1P35221 906 aaKnown RBP15.05■□□□□ -0
VPS39-210ENST00000568357 TRIM23P36406 574 aa15.05■□□□□ -0
VPS39-210ENST00000568357 ETV3P41162 512 aa15.05■□□□□ -0
VPS39-210ENST00000568357 CD86P42081 329 aa15.05■□□□□ -0
VPS39-210ENST00000568357 ACADVLP49748 655 aa15.05■□□□□ -0
VPS39-210ENST00000568357 SKOR1P84550 965 aa15.05■□□□□ -0
VPS39-210ENST00000568357 MTM1Q13496 603 aa15.05■□□□□ -0
VPS39-210ENST00000568357 PRKD1Q15139 912 aaPredicted RBP15.05■□□□□ -0
VPS39-210ENST00000568357 KCTD16Q68DU8 428 aa15.05■□□□□ -0
VPS39-210ENST00000568357 CRTC1Q6UUV9 634 aa15.05■□□□□ -0
VPS39-210ENST00000568357 MACC1Q6ZN28 852 aa15.05■□□□□ -0
VPS39-210ENST00000568357 RFLNAQ6ZTI6 216 aa15.05■□□□□ -0
VPS39-210ENST00000568357 Q6ZVL8 140 aa15.05■□□□□ -0
VPS39-210ENST00000568357 KIAA1328Q86T90 577 aa15.05■□□□□ -0
VPS39-210ENST00000568357 MARCH9Q86YJ5 346 aa15.05■□□□□ -0
VPS39-210ENST00000568357 CCDC50Q8IVM0 306 aa15.05■□□□□ -0
VPS39-210ENST00000568357 PHACTR4Q8IZ21 702 aa15.05■□□□□ -0
VPS39-210ENST00000568357 OR4C6Q8NH72 309 aa15.05■□□□□ -0
VPS39-210ENST00000568357 LMX1AQ8TE12 382 aa15.05■□□□□ -0
VPS39-210ENST00000568357 TSACCQ96A04 125 aaPredicted RBP15.05■□□□□ -0
VPS39-210ENST00000568357 AGAP3Q96P47 875 aa15.05■□□□□ -0
VPS39-210ENST00000568357 HERPUD2Q9BSE4 406 aa15.05■□□□□ -0
VPS39-210ENST00000568357 HEMGNQ9BXL5 484 aa15.05■□□□□ -0
VPS39-210ENST00000568357 BRD8Q9H0E9 1235 aa15.05■□□□□ -0
VPS39-210ENST00000568357 HAUS2Q9NVX0 235 aa15.05■□□□□ -0
VPS39-210ENST00000568357 HELZ2Q9BYK8 2649 aaKnown RBP15.05■□□□□ -0
VPS39-210ENST00000568357 A0A0J9YYE9 177 aa15.04■□□□□ -0
VPS39-210ENST00000568357 NEMP2A6NFY4 417 aa15.04■□□□□ -0
VPS39-210ENST00000568357 H3BM21 787 aa15.04■□□□□ -0
VPS39-210ENST00000568357 AQP9O43315 295 aa15.04■□□□□ -0
VPS39-210ENST00000568357 TRBC1P01850 177 aa15.04■□□□□ -0
VPS39-210ENST00000568357 TGM2P21980 687 aa15.04■□□□□ -0
VPS39-210ENST00000568357 NFKBIAP25963 317 aa15.04■□□□□ -0
VPS39-210ENST00000568357 PPARDQ03181 441 aa15.04■□□□□ -0
VPS39-210ENST00000568357 PTSQ03393 145 aa15.04■□□□□ -0
VPS39-210ENST00000568357 C1orf61Q13536 156 aa15.04■□□□□ -0
VPS39-210ENST00000568357 NFATC4Q14934 902 aa15.04■□□□□ -0
VPS39-210ENST00000568357 ALG11Q2TAA5 492 aa15.04■□□□□ -0
VPS39-210ENST00000568357 TEX44Q53QW1 395 aa15.04■□□□□ -0
VPS39-210ENST00000568357 PRRT3Q5FWE3 981 aa15.04■□□□□ -0
VPS39-210ENST00000568357 FAXCQ5TGI0 409 aa15.04■□□□□ -0
VPS39-210ENST00000568357 LRRC66Q68CR7 880 aa15.04■□□□□ -0
VPS39-210ENST00000568357 ESRP1Q6NXG1 681 aaKnown RBP15.04■□□□□ -0
VPS39-210ENST00000568357 PNCKQ6P2M8 343 aa15.04■□□□□ -0
VPS39-210ENST00000568357 ENPP7Q6UWV6 458 aa15.04■□□□□ -0
VPS39-210ENST00000568357 DHRS13Q6UX07 377 aa15.04■□□□□ -0
VPS39-210ENST00000568357 USP45Q70EL2 814 aa15.04■□□□□ -0
VPS39-210ENST00000568357 BZW1Q7L1Q6 419 aaKnown RBP15.04■□□□□ -0
VPS39-210ENST00000568357 TMPRSS7Q7RTY8 843 aa15.04■□□□□ -0
VPS39-210ENST00000568357 TECPR1Q7Z6L1 1165 aa15.04■□□□□ -0
VPS39-210ENST00000568357 TFB1MQ8WVM0 346 aaKnown RBP15.04■□□□□ -0
VPS39-210ENST00000568357 P3H4Q92791 437 aa15.04■□□□□ -0
VPS39-210ENST00000568357 HAUS1Q96CS2 278 aa15.04■□□□□ -0
VPS39-210ENST00000568357 IMP4Q96G21 291 aaKnown RBP15.04■□□□□ -0
VPS39-210ENST00000568357 RBM41Q96IZ5 413 aaKnown RBP15.04■□□□□ -0
VPS39-210ENST00000568357 LGR4Q9BXB1 951 aa15.04■□□□□ -0
VPS39-210ENST00000568357 CLPBQ9H078 707 aa15.04■□□□□ -0
VPS39-210ENST00000568357 PCDH9Q9HC56 1237 aa15.04■□□□□ -0
VPS39-210ENST00000568357 NLGN3Q9NZ94 848 aa15.04■□□□□ -0
VPS39-210ENST00000568357 PCDHGA1Q9Y5H4 931 aa15.04■□□□□ -0
VPS39-210ENST00000568357 CSNK1G3Q9Y6M4 447 aa15.04■□□□□ -0
VPS39-210ENST00000568357 LY6G6EA0A0G2JKS1 128 aa15.03■□□□□ -0
VPS39-210ENST00000568357 MACROD2A1Z1Q3 448 aa15.03■□□□□ -0
VPS39-210ENST00000568357 TMEM202A6NGA9 273 aa15.03■□□□□ -0
VPS39-210ENST00000568357 PTPN3P26045 913 aa15.03■□□□□ -0
VPS39-210ENST00000568357 CTNNA2P26232 953 aa15.03■□□□□ -0
VPS39-210ENST00000568357 HTR1BP28222 390 aa15.03■□□□□ -0
VPS39-210ENST00000568357 EPHB1P54762 984 aa15.03■□□□□ -0
VPS39-210ENST00000568357 SRP54P61011 504 aaKnown RBP15.03■□□□□ -0
VPS39-210ENST00000568357 RPL26P61254 145 aaKnown RBP15.03■□□□□ -0
VPS39-210ENST00000568357 WASHC5Q12768 1159 aa15.03■□□□□ -0
VPS39-210ENST00000568357 KIF5AQ12840 1032 aa15.03■□□□□ -0
VPS39-210ENST00000568357 ARHGEF7Q14155 803 aa15.03■□□□□ -0
VPS39-210ENST00000568357 PPP2R5EQ16537 467 aa15.03■□□□□ -0
VPS39-210ENST00000568357 CDKN3Q16667 212 aa15.03■□□□□ -0
VPS39-210ENST00000568357 AADACL2Q6P093 401 aa15.03■□□□□ -0
VPS39-210ENST00000568357 CCNI2Q6ZMN8 369 aaPredicted RBP15.03■□□□□ -0
VPS39-210ENST00000568357 BBS12Q6ZW61 710 aa15.03■□□□□ -0
VPS39-210ENST00000568357 RD3Q7Z3Z2 195 aa15.03■□□□□ -0
VPS39-210ENST00000568357 NT5DC3Q86UY8 548 aa15.03■□□□□ -0
VPS39-210ENST00000568357 ZC3H18Q86VM9 953 aaKnown RBP15.03■□□□□ -0
VPS39-210ENST00000568357 HID1Q8IV36 788 aa15.03■□□□□ -0
VPS39-210ENST00000568357 NDUFAF2Q8N183 169 aa15.03■□□□□ -0
VPS39-210ENST00000568357 LPCAT1Q8NF37 534 aa15.03■□□□□ -0
VPS39-210ENST00000568357 BTN2A2Q8WVV5 523 aa15.03■□□□□ -0
VPS39-210ENST00000568357 HNRNPLLQ8WVV9 542 aaKnown RBP15.03■□□□□ -0
VPS39-210ENST00000568357 ALG3Q92685 438 aa15.03■□□□□ -0
VPS39-210ENST00000568357 TADA1Q96BN2 335 aa15.03■□□□□ -0
VPS39-210ENST00000568357 NUS1Q96E22 293 aa15.03■□□□□ -0
VPS39-210ENST00000568357 DTD2Q96FN9 168 aa15.03■□□□□ -0
VPS39-210ENST00000568357 APOLD1Q96LR9 279 aa15.03■□□□□ -0
VPS39-210ENST00000568357 TEKT5Q96M29 485 aa15.03■□□□□ -0
VPS39-210ENST00000568357 WDR92Q96MX6 357 aa15.03■□□□□ -0
VPS39-210ENST00000568357 RBM15Q96T37 977 aaKnown RBP eCLIP15.03■□□□□ -0
VPS39-210ENST00000568357 LRRC61Q9BV99 259 aa15.03■□□□□ -0
VPS39-210ENST00000568357 SLC13A1Q9BZW2 595 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms