RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	TSG101	Q99816	390 aa		11.77	□□□□□ -0.53
CLK3-222	ENST00000568232	ZPBP	Q9BS86	351 aa		11.77	□□□□□ -0.53
CLK3-222	ENST00000568232	GSDMC	Q9BYG8	508 aa		11.77	□□□□□ -0.53
CLK3-222	ENST00000568232	MAGEB5	Q9BZ81	275 aa		11.77	□□□□□ -0.53
CLK3-222	ENST00000568232	TWSG1	Q9GZX9	223 aa		11.77	□□□□□ -0.53
CLK3-222	ENST00000568232	UBE2T	Q9NPD8	197 aa	Predicted RBP	11.77	□□□□□ -0.53
CLK3-222	ENST00000568232	HPCAL4	Q9UM19	191 aa		11.77	□□□□□ -0.53
CLK3-222	ENST00000568232	MFHAS1	Q9Y4C4	1052 aa		11.77	□□□□□ -0.53
CLK3-222	ENST00000568232	PLEKHM1	Q9Y4G2	1056 aa		11.77	□□□□□ -0.53
CLK3-222	ENST00000568232	TNRC6A	Q8NDV7	1962 aa	Known RBP	11.77	□□□□□ -0.53
CLK3-222	ENST00000568232	ESPL1	Q14674	2120 aa		11.77	□□□□□ -0.53
CLK3-222	ENST00000568232	SHANK1	Q9Y566	2161 aa		11.77	□□□□□ -0.53
CLK3-222	ENST00000568232	ZNF106	Q9H2Y7	1883 aa	Known RBP	11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	ANKRD36	A6QL64	1941 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	CXorf51A	A0A1B0GTR3	108 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	ARHGAP10	A1A4S6	786 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	PIPSL	A2A3N6	862 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	POLR1C	O15160	346 aa	Predicted RBP	11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	IGSF6	O95976	241 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	CEACAM5	P06731	702 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	HOXC4	P09017	264 aa	Predicted RBP	11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	GM2A	P17900	193 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	MMP12	P39900	470 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	GNPDA1	P46926	289 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	RHOA	P61586	193 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	CTBS	Q01459	385 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	TSR1	Q2NL82	804 aa	Known RBP	11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	PTPN20	Q4JDL3	420 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	RAB6C	Q53S08	254 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	RWDD4	Q6NW29	188 aa	Known RBP	11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	GJB7	Q6PEY0	223 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	PHLDB2	Q86SQ0	1253 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	ZC3H18	Q86VM9	953 aa	Known RBP	11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	NLRP14	Q86W24	1093 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	FAM131B	Q86XD5	332 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	TP53INP2	Q8IXH6	220 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	ZNF397	Q8NF99	534 aa	Predicted RBP	11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	AHCYL2	Q96HN2	611 aa	Known RBP	11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	DPYSL5	Q9BPU6	564 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	KLC2	Q9H0B6	622 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	RAB6C	Q9H0N0	254 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	WDR26	Q9H7D7	661 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	PLCB1	Q9NQ66	1216 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	RRN3	Q9NYV6	651 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	PPARGC1A	Q9UBK2	798 aa	Known RBP	11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	KLHL3	Q9UH77	587 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	STAP1	Q9ULZ2	295 aa		11.76	□□□□□ -0.53
CLK3-222	ENST00000568232	BECN2	A8MW95	431 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232		A8MX80	341 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	FAM72C	H0Y354	149 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	KDELR3	O43731	214 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	KRT86	O43790	486 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	BUB1B	O60566	1050 aa	Predicted RBP	11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	F9	P00740	461 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	MAN1A1	P33908	653 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	ETFB	P38117	255 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	USP8	P40818	1118 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	POLD2	P49005	469 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	SUOX	P51687	545 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	PGD	P52209	483 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	CETN1	Q12798	172 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	RALGDS	Q12967	914 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	CHAF1B	Q13112	559 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	SEMA5A	Q13591	1074 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	NR6A1	Q15406	480 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	SLC25A52	Q3SY17	297 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	FAM72A	Q5TYM5	149 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	CPZ	Q66K79	652 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	FAM72D	Q6L9T8	149 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	ERAP2	Q6P179	960 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	PNCK	Q6P2M8	343 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	C6orf15	Q6UXA7	325 aa	Predicted RBP	11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	KRBA2	Q6ZNG9	492 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	FAM72B	Q86X60	149 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	ZNF354C	Q86Y25	554 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	APLF	Q8IW19	511 aa	Predicted RBP	11.75	□□□□□ -0.53
CLK3-222	ENST00000568232		Q8NA96	180 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	GALNT6	Q8NCL4	622 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	C19orf60	Q96EN9	201 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	C5orf34	Q96MH7	638 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	NCAPG	Q9BPX3	1015 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	ULBP3	Q9BZM4	244 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	UNK	Q9C0B0	810 aa	Known RBP	11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	MAGEH1	Q9H213	219 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	SUV39H2	Q9H5I1	410 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	SYNC	Q9H7C4	482 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	SUFU	Q9UMX1	484 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	SLC5A6	Q9Y289	635 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	ATP8A1	Q9Y2Q0	1164 aa		11.75	□□□□□ -0.53
CLK3-222	ENST00000568232	HIVEP1	P15822	2718 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	TSPAN11	A1L157	253 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	RAMP2	O60895	175 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	CREG1	O75629	220 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	F13A1	P00488	732 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	ZSCAN22	P10073	491 aa	Predicted RBP	11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	FLT3	P36888	993 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	ADCY8	P40145	1251 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	NOP2	P46087	812 aa	Known RBP	11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	GPLD1	P80108	840 aa		11.74	□□□□□ -0.53
CLK3-222	ENST00000568232	RAPGEF1	Q13905	1077 aa		11.74	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms