RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 C1orf54Q8WWF1 131 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 ATG4AQ8WYN0 398 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 SKA1Q96BD8 255 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 IMP4Q96G21 291 aaKnown RBP17.31■□□□□ 0.36
CLN3-217ENST00000565354 DCBLD2Q96PD2 775 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 MYOCQ99972 504 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 C1QTNF7Q9BXJ2 289 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 DNPEPQ9ULA0 475 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 ZFR2Q9UPR6 939 aaKnown RBP17.31■□□□□ 0.36
CLN3-217ENST00000565354 ZNF148Q9UQR1 794 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 SNX11Q9Y5W9 270 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 SLCO1B1Q9Y6L6 691 aa17.31■□□□□ 0.36
CLN3-217ENST00000565354 IGLON5A6NGN9 336 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 A8MX80 341 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 LATO43561 262 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 LZTS3O60299 673 aaPredicted RBP17.3■□□□□ 0.36
CLN3-217ENST00000565354 MMP20O60882 483 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 TM7SF2O76062 418 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 ELFN1P0C7U0 828 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 PRLRP16471 622 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 CTPS1P17812 591 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 ACTN2P35609 894 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 MMP12P39900 470 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 SEMG2Q02383 582 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 SNX1Q13596 522 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 ARHGEF7Q14155 803 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 STAT4Q14765 748 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 ZNF284Q2VY69 593 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 TMEM52BQ4KMG9 183 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 ANKRD20A2Q5SQ80 823 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 ANKRD20A1Q5TYW2 823 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 ANKRD20A3Q5VUR7 823 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 NAPEPLDQ6IQ20 393 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 ARHGEF18Q6ZSZ5 1173 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 SPATA22Q8NHS9 363 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 SLC35B2Q8TB61 432 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 SLC39A7Q92504 469 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 SLC6A18Q96N87 628 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 FCRL5Q96RD9 977 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 OSBPL9Q96SU4 736 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 NAP1L3Q99457 506 aaPredicted RBP17.3■□□□□ 0.36
CLN3-217ENST00000565354 NAPGQ99747 312 aaPredicted RBP17.3■□□□□ 0.36
CLN3-217ENST00000565354 TMEM121Q9BTD3 319 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 ADGRE3Q9BY15 652 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 SLC17A9Q9BYT1 436 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 TM9SF3Q9HD45 589 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 UBP1Q9NZI7 540 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 FAM153AQ9UHL3 310 aa17.3■□□□□ 0.36
CLN3-217ENST00000565354 PRAMEF26H0Y7S4 382 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 SPINT1O43278 529 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 LIASO43766 372 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 PCDHGA12O60330 932 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 PMPCBO75439 489 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 C1QL1O75973 258 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 PAK4O96013 591 aaPredicted RBP17.29■□□□□ 0.36
CLN3-217ENST00000565354 MT-CYBP00156 380 aaPredicted RBP17.29■□□□□ 0.36
CLN3-217ENST00000565354 MMP2P08253 660 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 PDHA1P08559 390 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 HNRNPA2B1P22626 353 aaKnown RBP17.29■□□□□ 0.36
CLN3-217ENST00000565354 VIPR1P32241 457 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 CD68P34810 354 aaPredicted RBP17.29■□□□□ 0.36
CLN3-217ENST00000565354 GRIA4P48058 902 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 C21orf59P57076 290 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 RPL26P61254 145 aaKnown RBP17.29■□□□□ 0.36
CLN3-217ENST00000565354 RACK1P63244 317 aaKnown RBP17.29■□□□□ 0.36
CLN3-217ENST00000565354 TMEM259Q4ZIN3 620 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 CCDC157Q569K6 752 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 DPPA4Q7L190 304 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 KDELC2Q7Z4H8 507 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 C17orf53Q8N3J3 647 aaPredicted RBP17.29■□□□□ 0.36
CLN3-217ENST00000565354 FAM71DQ8N9W8 422 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 CCDC110Q8TBZ0 833 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 LRRC45Q96CN5 670 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 SPATA13Q96N96 652 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 GBA3Q9H227 469 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 EBF2Q9HAK2 575 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 FZD3Q9NPG1 666 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 HOMER3Q9NSC5 361 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 B4GALT6Q9UBX8 382 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 SNX12Q9UMY4 172 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 RPL26L1Q9UNX3 145 aaKnown RBP17.29■□□□□ 0.36
CLN3-217ENST00000565354 ANKRD6Q9Y2G4 727 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 ZKSCAN5Q9Y2L8 839 aa17.29■□□□□ 0.36
CLN3-217ENST00000565354 MYLKQ15746 1914 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 CTAGE9A4FU28 777 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 GOLGA6CA6NDK9 693 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 GOLGA6BA6NDN3 693 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 PGRMC1O00264 195 aaKnown RBP17.28■□□□□ 0.36
CLN3-217ENST00000565354 ATXN7O15265 892 aaPredicted RBP17.28■□□□□ 0.36
CLN3-217ENST00000565354 FZD6O60353 706 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 ANXA9O76027 345 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 GOLGA6DP0CG33 693 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 C6P13671 934 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 TCP1P17987 556 aaKnown RBP17.28■□□□□ 0.36
CLN3-217ENST00000565354 CD38P28907 300 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 LIG3P49916 1009 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 CCT8P50990 548 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 GEMP55040 296 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 CDK18Q07002 472 aa17.28■□□□□ 0.36
CLN3-217ENST00000565354 GALNT3Q14435 633 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms