RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 HEXIM1O94992 359 aaKnown RBP17.14■□□□□ 0.33
CLN3-216ENST00000565316 MYCLP1P12525 358 aaPredicted RBP17.14■□□□□ 0.33
CLN3-216ENST00000565316 SKILP12757 684 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 SLC5A2P31639 672 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 VIPR1P32241 457 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 ARL4AP40617 200 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 ZNF235Q14590 738 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 NR1I3Q14994 352 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 TSR1Q2NL82 804 aaKnown RBP17.14■□□□□ 0.33
CLN3-216ENST00000565316 FIGNQ5HY92 759 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 RALGPS1Q5JS13 557 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 TMCO3Q6UWJ1 677 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 SPRED1Q7Z699 444 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 C17orf82Q86X59 251 aaPredicted RBP17.14■□□□□ 0.33
CLN3-216ENST00000565316 SFTPA2Q8IWL1 248 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 PAF1Q8N7H5 531 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 CCL4L1Q8NHW4 92 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 GPBAR1Q8TDU6 330 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 TEX101Q9BY14 249 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 MYO1AQ9UBC5 1043 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 PHTF1Q9UMS5 762 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 RNF215Q9Y6U7 377 aa17.14■□□□□ 0.33
CLN3-216ENST00000565316 PRSS38A1L453 326 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 NUDT21O43809 227 aaKnown RBP17.13■□□□□ 0.33
CLN3-216ENST00000565316 FUCA1P04066 466 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 CEACAM5P06731 702 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 RARAP10276 462 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 PLA2G2AP14555 144 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 TEAD1P28347 426 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 TRAF2Q12933 501 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 PIGHQ14442 188 aaPredicted RBP17.13■□□□□ 0.33
CLN3-216ENST00000565316 SMTNL2Q2TAL5 461 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 HGSNATQ68CP4 663 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 SPECC1LQ69YQ0 1117 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 ZNF605Q86T29 641 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 NIPA2Q8N8Q9 360 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 Q8N9G6 341 aaPredicted RBP17.13■□□□□ 0.33
CLN3-216ENST00000565316 TEKT4Q8WW24 435 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 TMEM159Q96B96 161 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 NUS1Q96E22 293 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 DTD2Q96FN9 168 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 MCCC1Q96RQ3 725 aaPredicted RBP17.13■□□□□ 0.33
CLN3-216ENST00000565316 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.13■□□□□ 0.33
CLN3-216ENST00000565316 FRMD8Q9BZ67 464 aaPredicted RBP17.13■□□□□ 0.33
CLN3-216ENST00000565316 PHPT1Q9NRX4 125 aaPredicted RBP17.13■□□□□ 0.33
CLN3-216ENST00000565316 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.13■□□□□ 0.33
CLN3-216ENST00000565316 LRIT1Q9P2V4 623 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 ATXN7L1Q9ULK2 861 aaPredicted RBP17.13■□□□□ 0.33
CLN3-216ENST00000565316 PPIL1Q9Y3C6 166 aa17.13■□□□□ 0.33
CLN3-216ENST00000565316 PSMD11O00231 422 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 NVLO15381 856 aaKnown RBP17.12■□□□□ 0.33
CLN3-216ENST00000565316 EFSO43281 561 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 CPP00450 1065 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 HGFP14210 728 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 LHCGRP22888 699 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 NFKBIAP25963 317 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 ZNF165P49910 485 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 CDH6P55285 790 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 B4GALNT1Q00973 533 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 IQCB1Q15051 598 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 TXNRD3NBQ6F5E7 133 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 CCDC81Q6ZN84 652 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 HSD11B1LQ7Z5J1 315 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 NRROSQ86YC3 692 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 SLITRK4Q8IW52 837 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 HSPH1Q92598 858 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 SYN2Q92777 582 aaPredicted RBP17.12■□□□□ 0.33
CLN3-216ENST00000565316 SCRN2Q96FV2 425 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 CCNL2Q96S94 520 aaPredicted RBP17.12■□□□□ 0.33
CLN3-216ENST00000565316 DPEP2Q9H4A9 486 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 PCDH18Q9HCL0 1135 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 SPATS2LQ9NUQ6 558 aaKnown RBP17.12■□□□□ 0.33
CLN3-216ENST00000565316 TRNAU1APQ9NX07 287 aaKnown RBP17.12■□□□□ 0.33
CLN3-216ENST00000565316 LOXL2Q9Y4K0 774 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 BZW2Q9Y6E2 419 aaKnown RBP17.12■□□□□ 0.33
CLN3-216ENST00000565316 UNC13CQ8NB66 2214 aa17.12■□□□□ 0.33
CLN3-216ENST00000565316 B4DGG1 531 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 PGLSO95336 258 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 CYP2A6P11509 494 aaPredicted RBP17.11■□□□□ 0.33
CLN3-216ENST00000565316 CCNB1P14635 433 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 IL4RP24394 825 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 ETV3P41162 512 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 MMP13P45452 471 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 SLC25A11Q02978 314 aaKnown RBP17.11■□□□□ 0.33
CLN3-216ENST00000565316 ARHGEF7Q14155 803 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 NR1D2Q14995 579 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 MARC1Q5VT66 337 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 TMPRSS9Q7Z410 1059 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 ZNF438Q7Z4V0 828 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 TECPR1Q7Z6L1 1165 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 HEATR4Q86WZ0 1026 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 LRRC49Q8IUZ0 686 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 BBS5Q8N3I7 341 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 ATPAF2Q8N5M1 289 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 TEX26Q8N6G2 289 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 FAM71BQ8TC56 605 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 KIAA1524Q8TCG1 905 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 PDCD6IPQ8WUM4 868 aaKnown RBP17.11■□□□□ 0.33
CLN3-216ENST00000565316 SEMA4CQ9C0C4 833 aa17.11■□□□□ 0.33
CLN3-216ENST00000565316 CARS2Q9HA77 564 aaKnown RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms