RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 SNRPAP09012 282 aaKnown RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 TMIGD3P0DMS9 266 aaPredicted RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 RARGP13631 454 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 PRG2P13727 222 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 ZNF37AP17032 561 aaPredicted RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 GJA1P17302 382 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 VCLP18206 1134 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 CASTP20810 708 aaKnown RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 GLRA2P23416 452 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 PSMA2P25787 234 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 PTBP1P26599 531 aaKnown RBP eCLIP5.17□□□□□ -1.58
VPS35-205ENST00000563984 ALDH4A1P30038 563 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 NMT1P30419 496 aaKnown RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 LRPAP1P30533 357 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 ACSL1P33121 698 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 PPM1AP35813 382 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 ACAA2P42765 397 aaKnown RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 RGS19P49795 217 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 RGS7P49802 495 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 CPT1AP50416 773 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 GBX2P52951 348 aaPredicted RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 ATP12AP54707 1039 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 ADARP55265 1226 aaKnown RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 KCNJ10P78508 379 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 TUBB3Q13509 450 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 EFR3AQ14156 821 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 RCN2Q14257 317 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 PLS1Q14651 629 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 NR1D2Q14995 579 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 TRADDQ15628 312 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 TSC22D1Q15714 1073 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 MYLK3Q32MK0 819 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 ATAT1Q5SQI0 421 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 C12orf60Q5U649 245 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 HAUS3Q68CZ6 603 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 SYCE2Q6PIF2 218 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 SLC30A10Q6XR72 485 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 RFX8Q6ZV50 586 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 CHST15Q7LFX5 561 aaPredicted RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 GRASPQ7Z6J2 395 aaPredicted RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 USP37Q86T82 979 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 TMEM200AQ86VY9 491 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 ZNF677Q86XU0 584 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 RHPN2Q8IUC4 686 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 SYCE1Q8N0S2 351 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 ARFGAP2Q8N6H7 521 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 CCNYL1Q8N7R7 359 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 ANKFN1Q8N957 763 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 BOLLQ8N9W6 283 aaKnown RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 B3GALNT2Q8NCR0 500 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 ZNF680Q8NEM1 530 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 CFAP61Q8NHU2 1237 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 SCFD1Q8WVM8 642 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 WDR60Q8WVS4 1066 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 ASZ1Q8WWH4 475 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 METTL21AQ8WXB1 218 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 PTP4A1Q93096 173 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 LRRC59Q96AG4 307 aaKnown RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 RMDN1Q96DB5 314 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 ANKRD36BP1Q96IX9 119 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 METTL2AQ96IZ6 378 aaKnown RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 ADAD1Q96M93 576 aaKnown RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 TBCBQ99426 244 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 STK33Q9BYT3 514 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 CCSER1Q9C0I3 900 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 C17orf75Q9HAS0 396 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 SEMA4GQ9NTN9 838 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 ARMC1Q9NVT9 282 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 COQ3Q9NZJ6 369 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 LARSQ9P2J5 1176 aaKnown RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 RPS6KA6Q9UK32 745 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 CPSF3Q9UKF6 684 aaKnown RBP5.17□□□□□ -1.58
VPS35-205ENST00000563984 ASB3Q9Y575 518 aa5.17□□□□□ -1.58
VPS35-205ENST00000563984 FNDC1Q4ZHG4 1894 aaPredicted RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 ERVV-2B6SEH9 535 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 H0YIN7 160 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 MGST3O14880 152 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 HNRNPRO43390 633 aaKnown RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 SYNCRIPO60506 623 aaKnown RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 GAS8O95995 478 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 GALTP07902 379 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 HMOX1P09601 288 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 RALAP11233 206 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 PRPS2P11908 318 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 KRT5P13647 590 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 CHN1P15882 459 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 PPP3CBP16298 524 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 CCR1P32246 355 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 GRIA3P42263 894 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 DHPSP49366 369 aaPredicted RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 NDUFV1P49821 464 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 GATMP50440 423 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 NKX6-1P78426 367 aaPredicted RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 IFI35P80217 286 aaPredicted RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 RFTN1Q14699 578 aaPredicted RBP5.16□□□□□ -1.58
VPS35-205ENST00000563984 HERC3Q15034 1050 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 CDONQ4KMG0 1287 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 CCDC157Q569K6 752 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 STXBP5Q5T5C0 1151 aa5.16□□□□□ -1.58
VPS35-205ENST00000563984 PTRHD1Q6GMV3 140 aaKnown RBP5.16□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms