RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 DOCK9Q9BZ29 2069 aa16.6■□□□□ 0.25
VPS4A-202ENST00000562754 IGHV1OR15-9A0A0B4J2B8 117 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 C10orf142B7Z368 130 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 NEMP1O14524 444 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 AXIN1O15169 862 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 LAMTOR5O43504 91 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 TSPAN6O43657 245 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 CRTAMO95727 393 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 ELFN1P0C7U0 828 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 ZNF30P17039 623 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 MCM3P25205 808 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 NMBRP28336 390 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 AVPR2P30518 371 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 LIG3P49916 1009 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 PTSQ03393 145 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 ARHGEF7Q14155 803 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 MAP7D1Q3KQU3 841 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 UBAP2Q5T6F2 1119 aaKnown RBP16.59■□□□□ 0.25
VPS4A-202ENST00000562754 TSTD2Q5T7W7 516 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 CES3Q6UWW8 571 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 RFLNAQ6ZTI6 216 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 C1orf210Q8IVY1 113 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 CBARPQ8N350 705 aaPredicted RBP16.59■□□□□ 0.25
VPS4A-202ENST00000562754 FAM160A2Q8N612 972 aaPredicted RBP16.59■□□□□ 0.25
VPS4A-202ENST00000562754 FRMD1Q8N878 549 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 OR13C4Q8NGS5 318 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 PTCD2Q8WV60 388 aaKnown RBP16.59■□□□□ 0.25
VPS4A-202ENST00000562754 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP16.59■□□□□ 0.25
VPS4A-202ENST00000562754 DNAJC1Q96KC8 554 aaKnown RBP16.59■□□□□ 0.25
VPS4A-202ENST00000562754 C9orf72Q96LT7 481 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 TXLNGYQ9BZA5 131 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 TREX1Q9NSU2 369 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 IL17CQ9P0M4 197 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 SAMD15Q9P1V8 674 aa16.59■□□□□ 0.25
VPS4A-202ENST00000562754 ZFR2Q9UPR6 939 aaKnown RBP16.59■□□□□ 0.25
VPS4A-202ENST00000562754 MUC3AQ02505 3323 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 FAM237BA0A1B0GVD1 139 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 PRR23AA6NEV1 266 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 H0Y858 1186 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 CCL22O00626 93 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 MMP20O60882 483 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 ZNF217O75362 1048 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 PCDH8O95206 1070 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 SLC34A2O95436 690 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 TUBBP07437 444 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 C6P13671 934 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 PGAM1P18669 254 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 LPOP22079 712 aaPredicted RBP16.58■□□□□ 0.24
VPS4A-202ENST00000562754 PSMA3P25788 255 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 HMGCLP35914 325 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 MAGEA4P43358 317 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 ARSDP51689 593 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 PPP2CBP62714 309 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 PPP2CAP67775 309 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 ARMC3Q5W041 872 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 STEAP4Q687X5 459 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 SEL1L3Q68CR1 1132 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 RELL1Q8IUW5 271 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 OR4K2Q8NGD2 314 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 OR13J1Q8NGT2 312 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 CXorf40AQ8TE69 158 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 ZNF669Q96BR6 464 aaPredicted RBP16.58■□□□□ 0.24
VPS4A-202ENST00000562754 MFSD3Q96ES6 412 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 CFAP36Q96G28 342 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 TOE1Q96GM8 510 aaKnown RBP16.58■□□□□ 0.24
VPS4A-202ENST00000562754 COQ10AQ96MF6 247 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 FCRL3Q96P31 734 aaPredicted RBP16.58■□□□□ 0.24
VPS4A-202ENST00000562754 BTBD1Q9H0C5 482 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 TSPYL1Q9H0U9 437 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 SGK2Q9HBY8 427 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 PREBQ9HCU5 417 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 BPIFA1Q9NP55 256 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 WSB2Q9NYS7 404 aaPredicted RBP16.58■□□□□ 0.24
VPS4A-202ENST00000562754 NINJ2Q9NZG7 142 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 RIMKLBQ9ULI2 386 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 COQ6Q9Y2Z9 468 aa16.58■□□□□ 0.24
VPS4A-202ENST00000562754 GOLGA8CPA6NN73 597 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 C2orf81A6NN90 581 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 PSMD11O00231 422 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 STX7O15400 261 aaKnown RBP16.57■□□□□ 0.24
VPS4A-202ENST00000562754 RNGTTO60942 597 aaKnown RBP16.57■□□□□ 0.24
VPS4A-202ENST00000562754 SEMA4FO95754 770 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 CD6P30203 668 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 FNTBP49356 437 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 TMPRSS15P98073 1019 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 ACVR1Q04771 509 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 CSTF1Q05048 431 aaKnown RBP16.57■□□□□ 0.24
VPS4A-202ENST00000562754 FGL2Q14314 439 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 CRYMQ14894 314 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 ANKRD20A4Q4UJ75 823 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 TMEM259Q4ZIN3 620 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 ESRP1Q6NXG1 681 aaKnown RBP16.57■□□□□ 0.24
VPS4A-202ENST00000562754 UNC5AQ6ZN44 842 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 CEP128Q6ZU80 1094 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 NLRP9Q7RTR0 991 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 TECPR1Q7Z6L1 1165 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 TMEM135Q86UB9 458 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 OR2T34Q8NGX1 318 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 STYXQ8WUJ0 223 aa16.57■□□□□ 0.24
VPS4A-202ENST00000562754 CDC42EP4Q9H3Q1 356 aaKnown RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms