RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CCNJLQ8IV13 435 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 PSTKQ8IV42 348 aaKnown RBP11.66□□□□□ -0.54
USP3-220ENST00000561381 ATL2Q8NHH9 583 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 SNRNP27Q8WVK2 155 aaKnown RBP11.66□□□□□ -0.54
USP3-220ENST00000561381 COQ10AQ96MF6 247 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 PSKH2Q96QS6 385 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 SUDS3Q9H7L9 328 aaPredicted RBP11.66□□□□□ -0.54
USP3-220ENST00000561381 ZWILCHQ9H900 591 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 NOD2Q9HC29 1040 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 SEPT3Q9UH03 358 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 MOSPD1Q9UJG1 213 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 RNF215Q9Y6U7 377 aa11.66□□□□□ -0.54
USP3-220ENST00000561381 GCN1Q92616 2671 aaKnown RBP11.66□□□□□ -0.54
USP3-220ENST00000561381 KALRNO60229 2985 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 A0A0U1RQS6 177 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 PRSS38A1L453 326 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 HTRA2O43464 458 aaPredicted RBP11.65□□□□□ -0.54
USP3-220ENST00000561381 FUCA1P04066 466 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 HOXC4P09017 264 aaPredicted RBP11.65□□□□□ -0.54
USP3-220ENST00000561381 GZMAP12544 262 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 GLB1P16278 677 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 CR2P20023 1033 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 LHCGRP22888 699 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 PCK1P35558 622 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 PRKCIP41743 596 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 RENBPP51606 427 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 MAXP61244 160 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 POLR2LP62875 67 aaKnown RBP11.65□□□□□ -0.54
USP3-220ENST00000561381 TRAF2Q12933 501 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 HLTFQ14527 1009 aaKnown RBP eCLIP11.65□□□□□ -0.54
USP3-220ENST00000561381 TGIF1Q15583 401 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 DPYSL2Q16555 572 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 CERCAMQ5T4B2 595 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 DENND2CQ68D51 928 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 SPECC1LQ69YQ0 1117 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 HSD11B1LQ7Z5J1 315 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 POLNQ7Z5Q5 900 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 ZNF605Q86T29 641 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 JAMLQ86YT9 394 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 PDCD6IPQ8WUM4 868 aaKnown RBP11.65□□□□□ -0.54
USP3-220ENST00000561381 HSPH1Q92598 858 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 NUS1Q96E22 293 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 CCDC97Q96F63 343 aaPredicted RBP11.65□□□□□ -0.54
USP3-220ENST00000561381 BTBD6Q96KE9 485 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 DPEP2Q9H4A9 486 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 WDR26Q9H7D7 661 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 LRIT1Q9P2V4 623 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 PISDQ9UG56 409 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 APPL1Q9UKG1 709 aa11.65□□□□□ -0.54
USP3-220ENST00000561381 COL6A6A6NMZ7 2263 aa11.65□□□□□ -0.55
USP3-220ENST00000561381 HELZ2Q9BYK8 2649 aaKnown RBP11.64□□□□□ -0.55
USP3-220ENST00000561381 A0A1B0GTH6 734 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.64□□□□□ -0.55
USP3-220ENST00000561381 A0A1W2PQC6 194 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 NPIPB15A6NHN6 443 aaPredicted RBP11.64□□□□□ -0.55
USP3-220ENST00000561381 GOLGA6L22H0YM25 854 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 H3BRJ5 948 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 TNFRSF10CO14798 259 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 MAP3K7O43318 606 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 MAFKO60675 156 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 HEXIM1O94992 359 aaKnown RBP11.64□□□□□ -0.55
USP3-220ENST00000561381 MBD3O95983 291 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 CPP00450 1065 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 ITIH1P19827 911 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 KELP23276 732 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 CCKBRP32239 447 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 ETV5P41161 510 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 ETV3P41162 512 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 MLLT3P42568 568 aaPredicted RBP11.64□□□□□ -0.55
USP3-220ENST00000561381 MAZP56270 477 aaKnown RBP11.64□□□□□ -0.55
USP3-220ENST00000561381 ZFP36L1Q07352 338 aaKnown RBP11.64□□□□□ -0.55
USP3-220ENST00000561381 ZNF235Q14590 738 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 C14orf28Q4W4Y0 310 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 TMCO3Q6UWJ1 677 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 CCDC81Q6ZN84 652 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 RFLNAQ6ZTI6 216 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 SPRED1Q7Z699 444 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 TSPAN33Q86UF1 283 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 HEATR4Q86WZ0 1026 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 NRROSQ86YC3 692 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 LZTR1Q8N653 840 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 OR6C4Q8NGE1 309 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 WBP1Q96G27 269 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 TMEM74Q96NL1 305 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 ZNF599Q96NL3 588 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 CSPG4P5Q96PW8 444 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 SMIM14Q96QK8 99 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 NUDCD1Q96RS6 583 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 MGME1Q9BQP7 344 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 BPIFA3Q9BQP9 254 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 STRADBQ9C0K7 418 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 NAT10Q9H0A0 1025 aaKnown RBP11.64□□□□□ -0.55
USP3-220ENST00000561381 ISCUQ9H1K1 167 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 CARS2Q9HA77 564 aaKnown RBP11.64□□□□□ -0.55
USP3-220ENST00000561381 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.64□□□□□ -0.55
USP3-220ENST00000561381 SPATS2LQ9NUQ6 558 aaKnown RBP11.64□□□□□ -0.55
USP3-220ENST00000561381 LOXL2Q9Y4K0 774 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 PCDHGA7Q9Y5G6 932 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 SCINQ9Y6U3 715 aa11.64□□□□□ -0.55
USP3-220ENST00000561381 SCN8AQ9UQD0 1980 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms