RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 DCLK1O15075 740 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 CHADO15335 359 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 CD3EAPO15446 510 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 NARSO43776 548 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 TOP3BO95985 862 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 GOT2P00505 430 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 EIF2S1P05198 315 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 FGF1P05230 155 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 CREB1P16220 341 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 ADRA1DP25100 572 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 GP5P40197 560 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 ETV3P41162 512 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 PTGIRP43119 386 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 KPNA2P52292 529 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 DRG2P55039 364 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 NIPAL4Q0D2K0 466 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 WASHC5Q12768 1159 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 SEMA5AQ13591 1074 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 MYLK3Q32MK0 819 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 MMEL1Q495T6 779 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 SIRPB2Q5JXA9 342 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 RNASEH2BQ5TBB1 312 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 N4BP2L1Q5TBK1 243 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 GKAP1Q5VSY0 366 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 TTC39BQ5VTQ0 682 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 LRRC66Q68CR7 880 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 SLC30A9Q6PML9 568 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 SETD3Q86TU7 594 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 TERB1Q8NA31 727 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 DCAF4L2Q8NA75 395 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 CLP1Q92989 425 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 PRICKLE1Q96MT3 831 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 RIOK2Q9BVS4 552 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 KLHL25Q9H0H3 589 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 POLMQ9NP87 494 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF358Q9NW07 568 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 TMEM248Q9NWD8 314 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 ZMYM5Q9UJ78 669 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 CLCA2Q9UQC9 943 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 ERVW-1Q9UQF0 538 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 NBASA2RRP1 2371 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 TRIP11Q15643 1979 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 SCN10AQ9Y5Y9 1956 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 IFRD1O00458 451 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 MAFKO60675 156 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 ALDH1A2O94788 518 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 OAS1P00973 400 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 ACP5P13686 325 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 EPB42P16452 691 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 HLA-DPA1P20036 260 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 SCNN1AP37088 669 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 NPY2RP49146 381 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 HADHBP55084 474 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 RING1Q06587 406 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF844Q08AG5 666 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 GALNT2Q10471 571 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF234Q14588 700 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 OASLQ15646 514 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 FAM83EQ2M2I3 478 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 DGKKQ5KSL6 1271 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 UBAP2Q5T6F2 1119 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 SLC9A4Q6AI14 798 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 CRLF3Q8IUI8 442 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 MYO1HQ8N1T3 1032 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 BEND7Q8N7W2 519 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 ZNF557Q8N988 423 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 SERAC1Q96JX3 654 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 GDF15Q99988 308 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 MECRQ9BV79 373 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 IL21Q9HBE4 155 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 GDF3Q9NR23 364 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 FGFR1OP2Q9NVK5 253 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 IL36AQ9UHA7 158 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 RAB23Q9ULC3 237 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 ASF1AQ9Y294 204 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 CCDC162PA2VCL2 907 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 C5orf60A6NFR6 353 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 C2CD4DB7Z1M9 353 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 AP3B1O00203 1094 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 NVLO15381 856 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 PRAMEF11O60813 436 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 SDC3O75056 442 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 STATHP02808 62 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 MYL2P10916 166 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 BGNP21810 368 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 DDX6P26196 483 aaKnown RBP eCLIP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 HMOX2P30519 316 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 HALP42357 657 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 POU4F1Q01851 419 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 TRAF2Q12933 501 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 MTA1Q13330 715 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 PFKFB4Q16877 469 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 TTLL9Q3SXZ7 439 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 AARS2Q5JTZ9 985 aaKnown RBP5.45□□□□□ -1.54
VPS13C-209ENST00000560637 MFSD4BQ5TF39 518 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 SNX30Q5VWJ9 437 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 MSANTD2Q6P1R3 559 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 WDR93Q6P2C0 686 aa5.45□□□□□ -1.54
VPS13C-209ENST00000560637 TSSK4Q6SA08 328 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms