RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ZNF30P17039 623 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 HNRNPA2B1P22626 353 aaKnown RBP21.79■■□□□ 1.08
SNX1-210ENST00000560260 NFKBIAP25963 317 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 IGFALSP35858 605 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 ETV3P41162 512 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 CLDN2P57739 230 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 ARHGEF7Q14155 803 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 KCNJ11Q14654 390 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 ACOX1Q15067 660 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 PPP1R7Q15435 360 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 WSCD2Q2TBF2 565 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 CCDC70Q6NSX1 233 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 GCNT7Q6ZNI0 430 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 ZNF534Q76KX8 674 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 TECPR1Q7Z6L1 1165 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 SYT12Q8IV01 421 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 PELI3Q8N2H9 469 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 OR52K1Q8NGK4 314 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 CPT1BQ92523 772 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 SERAC1Q96JX3 654 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 RUNDC3BQ96NL0 473 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 MBNL1Q9NR56 388 aaKnown RBP21.79■■□□□ 1.08
SNX1-210ENST00000560260 FEZ2Q9UHY8 353 aaPredicted RBP21.79■■□□□ 1.08
SNX1-210ENST00000560260 PCDHGA5Q9Y5G8 931 aa21.79■■□□□ 1.08
SNX1-210ENST00000560260 A0A1W2PR77 199 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 E7EVH7 732 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 H0Y8X5 98 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 PSMD11O00231 422 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 PSMD3O43242 534 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 LZTS3O60299 673 aaPredicted RBP21.78■■□□□ 1.08
SNX1-210ENST00000560260 WNT1P04628 370 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 NUDT1P36639 197 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 MAGEA6P43360 314 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 TNNT3P45378 269 aaPredicted RBP21.78■■□□□ 1.08
SNX1-210ENST00000560260 SGCGQ13326 291 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 AGERQ15109 404 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 IRF4Q15306 451 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 PLA2G2CQ5R387 149 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 Q6ZVL8 140 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 BLOC1S5Q8TDH9 187 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 CENPTQ96BT3 561 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 DTD2Q96FN9 168 aa21.78■■□□□ 1.08
SNX1-210ENST00000560260 LENG8Q96PV6 779 aaPredicted RBP21.78■■□□□ 1.08
SNX1-210ENST00000560260 LAMA1P25391 3075 aa21.77■■□□□ 1.08
SNX1-210ENST00000560260 PCDH15Q96QU1 1955 aa21.77■■□□□ 1.08
SNX1-210ENST00000560260 PRAMEF26H0Y7S4 382 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 RAD51CO43502 376 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 TPH1P17752 444 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 TPSB2P20231 275 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 IVDP26440 423 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 LMAN1P49257 510 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 DHX34Q14147 1143 aaKnown RBP21.77■■□□□ 1.07
SNX1-210ENST00000560260 TPSAB1Q15661 275 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 TMC3Q7Z5M5 1100 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 DENND6BQ8NEG7 585 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 BMFQ96LC9 184 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 ZFYVE1Q9HBF4 777 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 CASS4Q9NQ75 786 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 FSCN3Q9NQT6 498 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 ASIC3Q9UHC3 531 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 CD84Q9UIB8 345 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 GMEB2Q9UKD1 530 aa21.77■■□□□ 1.07
SNX1-210ENST00000560260 POM121BA6NF01 834 aa21.76■■□□□ 1.07
SNX1-210ENST00000560260 BCAT2O15382 392 aaPredicted RBP21.76■■□□□ 1.07
SNX1-210ENST00000560260 BUD23O43709 281 aaKnown RBP21.76■■□□□ 1.07
SNX1-210ENST00000560260 AKT2P31751 481 aa21.76■■□□□ 1.07
SNX1-210ENST00000560260 TCEAL6Q6IPX3 200 aa21.76■■□□□ 1.07
SNX1-210ENST00000560260 SYDE1Q6ZW31 735 aaPredicted RBP21.76■■□□□ 1.07
SNX1-210ENST00000560260 DCLK2Q8N568 766 aa21.76■■□□□ 1.07
SNX1-210ENST00000560260 PLA2G15Q8NCC3 412 aa21.76■■□□□ 1.07
SNX1-210ENST00000560260 TCEAL3Q969E4 200 aa21.76■■□□□ 1.07
SNX1-210ENST00000560260 NUS1Q96E22 293 aa21.76■■□□□ 1.07
SNX1-210ENST00000560260 GPR63Q9BZJ6 419 aa21.76■■□□□ 1.07
SNX1-210ENST00000560260 PARD6AQ9NPB6 346 aa21.76■■□□□ 1.07
SNX1-210ENST00000560260 AASDHPPTQ9NRN7 309 aa21.76■■□□□ 1.07
SNX1-210ENST00000560260 A0A1B0GTW7 788 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 K7ESM1 405 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 HOXD12P35452 270 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 SPINT3P49223 89 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 RACK1P63244 317 aaKnown RBP21.75■■□□□ 1.07
SNX1-210ENST00000560260 BNC1Q01954 994 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 TUBB2AQ13885 445 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 PTPRCAPQ14761 206 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 RNASEH2BQ5TBB1 312 aaKnown RBP21.75■■□□□ 1.07
SNX1-210ENST00000560260 PPP1R21Q6ZMI0 780 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 GLT6D1Q7Z4J2 308 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 ABI3BPQ7Z7G0 1075 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 LINC00523Q86TU6 105 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 SCAMP4Q969E2 229 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 TUBB2BQ9BVA1 445 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 ABCG8Q9H221 673 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 HACD3Q9P035 362 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 NCDNQ9UBB6 729 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 KCTD3Q9Y597 815 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 ARL5AQ9Y689 179 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 WDR87Q6ZQQ6 2873 aa21.75■■□□□ 1.07
SNX1-210ENST00000560260 TP53BP1Q12888 1972 aaPredicted RBP21.74■■□□□ 1.07
SNX1-210ENST00000560260 BPTFQ12830 3046 aa21.74■■□□□ 1.07
SNX1-210ENST00000560260 DNALI1O14645 258 aaPredicted RBP21.74■■□□□ 1.07
SNX1-210ENST00000560260 PCCBP05166 539 aa21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms