RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 PKD1L2Q7Z442 2459 aa11.85□□□□□ -0.51
VRK1-204ENST00000555351 DMXL2Q8TDJ6 3036 aa11.85□□□□□ -0.51
VRK1-204ENST00000555351 SHROOM3Q8TF72 1996 aa11.85□□□□□ -0.51
VRK1-204ENST00000555351 FREM2Q5SZK8 3169 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 A0A0J9YYE9 177 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 LRRD1A4D1F6 860 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 NPIPB15A6NHN6 443 aaPredicted RBP11.84□□□□□ -0.51
VRK1-204ENST00000555351 C3orf70A6NLC5 250 aaPredicted RBP11.84□□□□□ -0.51
VRK1-204ENST00000555351 TRBC1P01850 177 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 LHCGRP22888 699 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 GJC1P36383 396 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 MLLT3P42568 568 aaPredicted RBP11.84□□□□□ -0.51
VRK1-204ENST00000555351 GBE1Q04446 702 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 C1orf61Q13536 156 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 PEX6Q13608 980 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 SLC14A2Q15849 920 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 CDKN3Q16667 212 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 ZFYVE27Q5T4F4 411 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 GUSBP11Q6P575 273 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 OGFOD3Q6PK18 319 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 BZW1Q7L1Q6 419 aaKnown RBP11.84□□□□□ -0.51
VRK1-204ENST00000555351 EFL1Q7Z2Z2 1120 aaKnown RBP11.84□□□□□ -0.51
VRK1-204ENST00000555351 TECPR1Q7Z6L1 1165 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 CPNE8Q86YQ8 564 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 CCDC13Q8IYE1 715 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 NRSN1Q8IZ57 195 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 PLD5Q8N7P1 536 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 TC2NQ8N9U0 490 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 SNIP1Q8TAD8 396 aaKnown RBP11.84□□□□□ -0.51
VRK1-204ENST00000555351 ARRDC2Q8TBH0 407 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 RAPGEF5Q92565 580 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 TDRD1Q9BXT4 1180 aaKnown RBP11.84□□□□□ -0.51
VRK1-204ENST00000555351 TRIM5Q9C035 493 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 LUC7LQ9NQ29 371 aaKnown RBP11.84□□□□□ -0.51
VRK1-204ENST00000555351 RAXQ9Y2V3 346 aa11.84□□□□□ -0.51
VRK1-204ENST00000555351 A0A0A6YYK5 440 aaPredicted RBP11.83□□□□□ -0.52
VRK1-204ENST00000555351 TTC24A2A3L6 582 aaPredicted RBP11.83□□□□□ -0.52
VRK1-204ENST00000555351 CPED1A4D0V7 1026 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 RGSL1A5PLK6 1076 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 TMEM202A6NGA9 273 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 CAPN8A6NHC0 703 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 PPP1R12AO14974 1030 aaPredicted RBP11.83□□□□□ -0.52
VRK1-204ENST00000555351 PNLIPP16233 465 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 ACTN2P35609 894 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 LSSP48449 732 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 NR2C2P49116 596 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 SEMG2Q02383 582 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 ITKQ08881 620 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 SLC10A2Q12908 348 aaPredicted RBP11.83□□□□□ -0.52
VRK1-204ENST00000555351 PDK1Q15118 436 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 TAZQ16635 292 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 ISXQ2M1V0 245 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 ODF2Q5BJF6 829 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 ADAMTSL4Q6UY14 1074 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 RBM44Q6ZP01 1051 aaKnown RBP11.83□□□□□ -0.52
VRK1-204ENST00000555351 HSD11B1LQ7Z5J1 315 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 CCNYQ8ND76 341 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 GPR156Q8NFN8 814 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.83□□□□□ -0.52
VRK1-204ENST00000555351 OR1E3Q8WZA6 343 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 PDXPQ96GD0 296 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 SCARF2Q96GP6 870 aaPredicted RBP11.83□□□□□ -0.52
VRK1-204ENST00000555351 ZNF578Q96N58 590 aaPredicted RBP11.83□□□□□ -0.52
VRK1-204ENST00000555351 OLFM3Q96PB7 478 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 MAK16Q9BXY0 300 aaKnown RBP11.83□□□□□ -0.52
VRK1-204ENST00000555351 FRMD8Q9BZ67 464 aaPredicted RBP11.83□□□□□ -0.52
VRK1-204ENST00000555351 CAAP1Q9H8G2 361 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 FGF22Q9HCT0 170 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 TRNAU1APQ9NX07 287 aaKnown RBP11.83□□□□□ -0.52
VRK1-204ENST00000555351 GPR34Q9UPC5 381 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 AK5Q9Y6K8 562 aa11.83□□□□□ -0.52
VRK1-204ENST00000555351 COL27A1Q8IZC6 1860 aaPredicted RBP11.83□□□□□ -0.52
VRK1-204ENST00000555351 KNTC1P50748 2209 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 PRSS38A1L453 326 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 A8MX80 341 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 TMX2-CTNND1H3BSU7 103 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 NTN3O00634 580 aaPredicted RBP11.82□□□□□ -0.52
VRK1-204ENST00000555351 APOL1O14791 398 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 PSTPIP1O43586 416 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 CSO75390 466 aaKnown RBP11.82□□□□□ -0.52
VRK1-204ENST00000555351 PRLP01236 227 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 HLA-DQB2P05538 268 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 PDHA1P08559 390 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 TGM2P21980 687 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 EIF2S3P41091 472 aaKnown RBP11.82□□□□□ -0.52
VRK1-204ENST00000555351 ETV3P41162 512 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 MAGEA1P43355 309 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 STC1P52823 247 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 EPHB1P54762 984 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 CLDN6P56747 220 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 ERVPABLB-1P60509 514 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 DSC2Q02487 901 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 TFDP2Q14188 446 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 TBC1D25Q3MII6 688 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 LRRC66Q68CR7 880 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 CRTC1Q6UUV9 634 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 Q6ZVL8 140 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 RD3Q7Z3Z2 195 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 HEATR4Q86WZ0 1026 aa11.82□□□□□ -0.52
VRK1-204ENST00000555351 GPBAR1Q8TDU6 330 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms