RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 MKRN2Q9H000 416 aaKnown RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 LINC00597Q9H2U6 94 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 EIF2B3Q9NR50 452 aaKnown RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 VPS45Q9NRW7 570 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 ABCB8Q9NUT2 735 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 RBM22Q9NW64 420 aaKnown RBP eCLIP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 EPS15L1Q9UBC2 864 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 UBA2Q9UBT2 640 aaPredicted RBP5.08□□□□□ -1.6
VTI1B-202ENST00000553619 EBF1Q9UH73 591 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 SLC25A13Q9UJS0 675 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 VPS28Q9UK41 221 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 CCL26Q9Y258 94 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 NEU2Q9Y3R4 380 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 MYOFQ9NZM1 2061 aa5.08□□□□□ -1.6
VTI1B-202ENST00000553619 CHD5Q8TDI0 1954 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 PRRC2BQ5JSZ5 2229 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 MYOCOSA0A1B0GUC4 107 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 A0A1W2PQ67 120 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 NEDD8-MDP1E9PL57 170 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 KCNK1O00180 336 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 RNF103O00237 685 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 CBX4O00257 560 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 NPC1O15118 1278 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 HOXC11O43248 304 aaPredicted RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 SEC31AO94979 1220 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 PRAMEF12O95522 483 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 SERPINF2P08697 491 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 PABPC1P11940 636 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 TYRP14679 529 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 ETS1P14921 441 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 FOSL2P15408 326 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 TPSB2P20231 275 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 NFKBIAP25963 317 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 IVDP26440 423 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 HOXD9P28356 352 aaPredicted RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 LTBRP36941 435 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 CCNFP41002 786 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 EIF2DP41214 584 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 VIPR2P41587 438 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 MMP13P45452 471 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 RPL21P46778 160 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 CSNK1DP48730 415 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 NPY2RP49146 381 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 CARSP49589 748 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 VPS41P49754 854 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 ST8SIA6P61647 398 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 SNRPD1P62314 119 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 VSNL1P62760 191 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 MRPS25P82663 173 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 FCHO2Q0JRZ9 810 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 GPS2Q13227 327 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 SEMA5AQ13591 1074 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 RUNX3Q13761 415 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 TPSAB1Q15661 275 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 PLEKHG6Q3KR16 790 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 DNAJC21Q5F1R6 531 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 CFAP58Q5T655 872 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 ARMC3Q5W041 872 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 TANGO2Q6ICL3 276 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 HIBCHQ6NVY1 386 aaPredicted RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 GK5Q6ZS86 529 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 TRMT10CQ7L0Y3 403 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 ZNF605Q86T29 641 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 CIR1Q86X95 450 aaPredicted RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 TMEM25Q86YD3 366 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 AHI1Q8N157 1196 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 ZNF567Q8N184 647 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 TEX26Q8N6G2 289 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 ZNF655Q8N720 491 aaPredicted RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 NPWQ8N729 165 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 DCAF4L2Q8NA75 395 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 MCUQ8NE86 351 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 OR7D4Q8NG98 312 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 GABPB2Q8TAK5 448 aaPredicted RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 CCDC110Q8TBZ0 833 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 SUSD6Q92537 303 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 NKD1Q969G9 470 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 ISG20Q96AZ6 181 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 LRRC39Q96DD0 335 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 TTC25Q96NG3 672 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 AGAP3Q96P47 875 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 MYADMQ96S97 322 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 SRPK1Q96SB4 655 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 PNKPQ96T60 521 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 CDX2Q99626 313 aaPredicted RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 NAT9Q9BTE0 207 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 CINPQ9BW66 212 aaPredicted RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 PHF7Q9BWX1 381 aaPredicted RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 POLR1EQ9GZS1 481 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 IRF2BPLQ9H1B7 796 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 SLC25A51Q9H1U9 297 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 POMKQ9H5K3 350 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 NOL6Q9H6R4 1146 aaKnown RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 C8orf33Q9H7E9 229 aaPredicted RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 UBE2ZQ9H832 354 aaPredicted RBP5.07□□□□□ -1.6
VTI1B-202ENST00000553619 BRD9Q9H8M2 597 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 ECT2Q9H8V3 914 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 LRRC40Q9H9A6 602 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 GLOD4Q9HC38 313 aa5.07□□□□□ -1.6
VTI1B-202ENST00000553619 XAB2Q9HCS7 855 aaKnown RBP5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms