RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 PTERQ96BW5 349 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 CCDC124Q96CT7 223 aaKnown RBP16.34■□□□□ 0.21
COL4A1-204ENST00000543140 CNDP1Q96KN2 507 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 TDRD1Q9BXT4 1180 aaKnown RBP16.34■□□□□ 0.21
COL4A1-204ENST00000543140 ZNF334Q9HCZ1 680 aaPredicted RBP16.34■□□□□ 0.21
COL4A1-204ENST00000543140 RAI2Q9Y5P3 530 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 WASF2Q9Y6W5 498 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 ANKRD12Q6UB98 2062 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 URODP06132 367 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 ITGAXP20702 1163 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 FDXRP22570 491 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 CDKN1CP49918 316 aaPredicted RBP16.34■□□□□ 0.21
COL4A1-204ENST00000543140 ZNF140P52738 457 aaPredicted RBP16.34■□□□□ 0.21
COL4A1-204ENST00000543140 STC1P52823 247 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 NSUN2Q08J23 767 aaKnown RBP eCLIP16.34■□□□□ 0.21
COL4A1-204ENST00000543140 C6orf163Q5TEZ5 329 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 CHST9Q7L1S5 443 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 SDCCAG8Q86SQ7 713 aaPredicted RBP16.34■□□□□ 0.21
COL4A1-204ENST00000543140 TRMT2BQ96GJ1 504 aaKnown RBP16.34■□□□□ 0.21
COL4A1-204ENST00000543140 TBX21Q9UL17 535 aa16.34■□□□□ 0.21
COL4A1-204ENST00000543140 LAMA3Q16787 3333 aa16.33■□□□□ 0.21
COL4A1-204ENST00000543140 SLCO1B7G3V0H7 640 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 AIM2O14862 343 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 TMCC1O94876 653 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 WISP3O95389 354 aaPredicted RBP16.33■□□□□ 0.2
COL4A1-204ENST00000543140 CD160O95971 181 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 PIK3R1P27986 724 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 CCNG1P51959 295 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 SULT2A1Q06520 285 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 TAF11Q15544 211 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 SNX32Q86XE0 403 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.33■□□□□ 0.2
COL4A1-204ENST00000543140 GPR150Q8NGU9 434 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 NRG4Q8WWG1 115 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 PEX13Q92968 403 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 ZFRQ96KR1 1074 aaKnown RBP16.33■□□□□ 0.2
COL4A1-204ENST00000543140 BPIFA1Q9NP55 256 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 NLE1Q9NVX2 485 aaPredicted RBP16.33■□□□□ 0.2
COL4A1-204ENST00000543140 FAM50BQ9Y247 325 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 FMO4P31512 558 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 HK2P52789 917 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 EPHB3P54753 998 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 RAB33AQ14088 237 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 RFTN1Q14699 578 aaPredicted RBP16.33■□□□□ 0.2
COL4A1-204ENST00000543140 TRMT5Q32P41 509 aaKnown RBP16.33■□□□□ 0.2
COL4A1-204ENST00000543140 TOX2Q96NM4 488 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 RETREG1Q9H6L5 497 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 STOML1Q9UBI4 398 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 VPS28Q9UK41 221 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 INSL5Q9Y5Q6 135 aa16.33■□□□□ 0.2
COL4A1-204ENST00000543140 F11P03951 625 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 ACTR3P61158 418 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 HERC6Q8IVU3 1022 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 WFDC5Q8TCV5 224 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 ZNF689Q96CS4 500 aaPredicted RBP16.32■□□□□ 0.2
COL4A1-204ENST00000543140 CCDC126Q96EE4 140 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 RSRC1Q96IZ7 334 aaKnown RBP16.32■□□□□ 0.2
COL4A1-204ENST00000543140 HSFX1Q9UBD0 423 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 ARHGAP26Q9UNA1 814 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 FCF1Q9Y324 198 aaKnown RBP16.32■□□□□ 0.2
COL4A1-204ENST00000543140 SUPT7LO94864 414 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 CD1DP15813 335 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 HDCP19113 662 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 ITGB8P26012 769 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 SLC34A1Q06495 639 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 TRAF2Q12933 501 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 PDAP1Q13442 181 aaKnown RBP16.32■□□□□ 0.2
COL4A1-204ENST00000543140 TAF1AQ15573 450 aaPredicted RBP16.32■□□□□ 0.2
COL4A1-204ENST00000543140 ATXN7L2Q5T6C5 722 aaPredicted RBP16.32■□□□□ 0.2
COL4A1-204ENST00000543140 FAM43BQ6ZT52 329 aaPredicted RBP16.32■□□□□ 0.2
COL4A1-204ENST00000543140 CUZD1Q86UP6 607 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 GIMAP7Q8NHV1 300 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 ADAMTS19Q8TE59 1207 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 FEM1AQ9BSK4 669 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 SPG21Q9NZD8 308 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 PACSIN3Q9UKS6 424 aa16.32■□□□□ 0.2
COL4A1-204ENST00000543140 C2orf81A6NN90 581 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 ANKRD66B4E2M5 251 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 F8W8V4 182 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 H3BMM5 538 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 SDHDO14521 159 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 UBFD1O14562 309 aaKnown RBP16.31■□□□□ 0.2
COL4A1-204ENST00000543140 TEX28O15482 410 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 CSPG5O95196 566 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 MT-CO1P00395 513 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 CSF2RAP15509 400 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 ZNF37AP17032 561 aaPredicted RBP16.31■□□□□ 0.2
COL4A1-204ENST00000543140 SP100P23497 879 aaPredicted RBP16.31■□□□□ 0.2
COL4A1-204ENST00000543140 PPARGP37231 505 aaPredicted RBP16.31■□□□□ 0.2
COL4A1-204ENST00000543140 NUDT2P50583 147 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 TBL3Q12788 808 aaKnown RBP16.31■□□□□ 0.2
COL4A1-204ENST00000543140 TCHHL1Q5QJ38 904 aaPredicted RBP16.31■□□□□ 0.2
COL4A1-204ENST00000543140 TRIM68Q6AZZ1 485 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 HPS6Q86YV9 775 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 TMA16Q96EY4 203 aaKnown RBP16.31■□□□□ 0.2
COL4A1-204ENST00000543140 DDX50Q9BQ39 737 aaKnown RBP16.31■□□□□ 0.2
COL4A1-204ENST00000543140 PLXNA4Q9HCM2 1894 aa16.31■□□□□ 0.2
COL4A1-204ENST00000543140 POLR3BQ9NW08 1133 aaPredicted RBP16.31■□□□□ 0.2
COL4A1-204ENST00000543140 STX18Q9P2W9 335 aaKnown RBP16.31■□□□□ 0.2
COL4A1-204ENST00000543140 CDH22Q9UJ99 828 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms