RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 FOXK1P85037 733 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 IGFBP7Q16270 282 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 NKAIN2Q5VXU1 208 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 NAGSQ8N159 534 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 IL22RA1Q8N6P7 574 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 ART4Q93070 314 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 COQ10AQ96MF6 247 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 SLC39A8Q9C0K1 460 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 SUDS3Q9H7L9 328 aaPredicted RBP17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 ADAM22Q9P0K1 906 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 TEX15Q9BXT5 2789 aa17.83■□□□□ 0.44
CLSTN3-214ENST00000542663 EPHB6O15197 1021 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 PPM1DO15297 605 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 SOX5P35711 763 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 GPR3P46089 330 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 PAPOLAP51003 745 aaKnown RBP17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 ZNF143P52747 638 aaPredicted RBP17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 NDST2P52849 883 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 AIF1P55008 147 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 RPL7AP62424 266 aaKnown RBP17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 BCL2L1Q07817 233 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 TRA2AQ13595 282 aaKnown RBP eCLIP17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 ACOX1Q15067 660 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 DPCR1Q3MIW9 517 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 TRIM72Q6ZMU5 477 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 PHF13Q86YI8 300 aaPredicted RBP17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 OR4D9Q8NGE8 314 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 DDA1Q9BW61 102 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 TEX101Q9BY14 249 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 GSDMCQ9BYG8 508 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 FRMD8Q9BZ67 464 aaPredicted RBP17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 SAMSN1Q9NSI8 373 aaKnown RBP17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 OCIAD1Q9NX40 245 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 TMEM9Q9P0T7 183 aa17.82■□□□□ 0.44
CLSTN3-214ENST00000542663 NBPF19A0A087WUL8 3843 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 USP9YO00507 2555 aaPredicted RBP17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 IGHV1OR21-1A0A087WYE8 117 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 PALMO75781 387 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 THRAP10827 490 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 GP1BBP13224 206 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 MPSTP25325 297 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 CASRP41180 1078 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 CCR10P46092 362 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 NSFP46459 744 aaKnown RBP17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 TPI1P60174 286 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 POLR2FP61218 127 aaKnown RBP17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 ILF3Q12906 894 aaKnown RBP eCLIP17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 SQSTM1Q13501 440 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 CLEC16AQ2KHT3 1053 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 SLC30A9Q6PML9 568 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 ARHGAP36Q6ZRI8 547 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 MON1BQ7L1V2 547 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 HEATR4Q86WZ0 1026 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 CACNA2D3Q8IZS8 1091 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 AGBL5Q8NDL9 886 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 NUS1Q96E22 293 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 MCEEQ96PE7 176 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 NLRC4Q9NPP4 1024 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 GPATCH2LQ9NWQ4 482 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 TRNAU1APQ9NX07 287 aaKnown RBP17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 B4GALT6Q9UBX8 382 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 SUFUQ9UMX1 484 aa17.81■□□□□ 0.44
CLSTN3-214ENST00000542663 PDE2AO00408 941 aaPredicted RBP17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 RAD1O60671 282 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 NTRK1P04629 796 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 CR2P20023 1033 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 GNPDA1P46926 289 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 POLR2LP62875 67 aaKnown RBP17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 CTBSQ01459 385 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 OGDHQ02218 1023 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 NSUN2Q08J23 767 aaKnown RBP eCLIP17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 CNGA3Q16281 694 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 TCP11X2Q5H9J9 407 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 PPP1R15BQ5SWA1 713 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 ARHGAP12Q8IWW6 846 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 BMPERQ8N8U9 685 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 SPRY4Q9C004 299 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 VPS16Q9H269 839 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 PHPT1Q9NRX4 125 aaPredicted RBP17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 SLC39A1Q9NY26 324 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 ANAPC2Q9UJX6 822 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 PILRAQ9UKJ1 303 aa17.8■□□□□ 0.44
CLSTN3-214ENST00000542663 ARHGAP42A6NI28 874 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 NKX2-8O15522 239 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 DUX1O43812 170 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 CALB1P05937 261 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 ERCC5P28715 1186 aaPredicted RBP17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 HTR7P34969 479 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 POLD2P49005 469 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 CDK3Q00526 305 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 CA9Q16790 459 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 CBARPQ8N350 705 aaPredicted RBP17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 CCDC112Q8NEF3 446 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 SPOCK2Q92563 424 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 SLC45A3Q96JT2 553 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 CATSPER2Q96P56 530 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 CNPY3Q9BT09 278 aa17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 CINPQ9BW66 212 aaPredicted RBP17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 ZNF71Q9NQZ8 489 aaPredicted RBP17.79■□□□□ 0.44
CLSTN3-214ENST00000542663 TAB2Q9NYJ8 693 aa17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms