RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CDKN2BP42772 138 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 NUMBP49757 651 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 ARSEP51690 589 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 PLK1P53350 603 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 NRG1Q02297 640 aaPredicted RBP12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 NR0B2Q15466 257 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 DEFB133Q30KQ1 61 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 TMEM259Q4ZIN3 620 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 TPRG1LQ5T0D9 272 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 FAM72AQ5TYM5 149 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 TTC39BQ5VTQ0 682 aaPredicted RBP12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 RNF219Q5W0B1 726 aaPredicted RBP12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 FAM72DQ6L9T8 149 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 FBXL22Q6P050 247 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 AADACL2Q6P093 401 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 TMCO3Q6UWJ1 677 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 RAB11FIP2Q7L804 512 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 DSG4Q86SJ6 1040 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 VASH2Q86V25 355 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 FAM72BQ86X60 149 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 VSIG1Q86XK7 387 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 DTX1Q86Y01 620 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 SLC35F3Q8IY50 421 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 FBXO39Q8N4B4 442 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 WDR48Q8TAF3 677 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 COG1Q8WTW3 980 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 OR8D1Q8WZ84 308 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 CSPG4P5Q96PW8 444 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 RNF157Q96PX1 679 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 ZYG11BQ9C0D3 744 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 ADNPQ9H2P0 1102 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 WDR70Q9NW82 654 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 PPARGC1AQ9UBK2 798 aaKnown RBP12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 HS3ST3A1Q9Y663 406 aa12.6□□□□□ -0.39
CLSTN3-208ENST00000538933 ITPR3Q14573 2671 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 SDK2Q58EX2 2172 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 ZNF487B1APH4 448 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 I6L893 689 aaPredicted RBP12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 MUSKO15146 869 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 ALOX15BO15296 676 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 AQP9O43315 295 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 CTSLP07711 333 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 HGFP14210 728 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 ERCC2P18074 760 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 PTPN7P35236 360 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 HCAR3P49019 387 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 EIF3IQ13347 325 aaKnown RBP12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 FGL2Q14314 439 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 ZNF354CQ86Y25 554 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 SLC13A5Q86YT5 568 aaPredicted RBP12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 TTC13Q8NBP0 860 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 FAM174AQ8TBP5 190 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 FAM71BQ8TC56 605 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 P3H4Q92791 437 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 ALG14Q96F25 216 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 MS4A14Q96JA4 679 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 CCDC3Q9BQI4 270 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 MPP6Q9NZW5 540 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 CDC23Q9UJX2 597 aa12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 SETD2Q9BYW2 2564 aaPredicted RBP12.59□□□□□ -0.39
CLSTN3-208ENST00000538933 C2CD3Q4AC94 2353 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 TCAF2A6NFQ2 919 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 C3orf70A6NLC5 250 aaPredicted RBP12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 A6NNZ2 444 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 FANCGO15287 622 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 RAD51BO15315 384 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 SPINT1O43278 529 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 GCATO75600 419 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 RHOQP17081 205 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 OR1E1P30953 314 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 NNMTP40261 264 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 CDH4P55283 916 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 EIF2B5Q13144 721 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 SLC12A1Q13621 1099 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 SPIDRQ14159 915 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 WHAMMP3Q1A5X7 153 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 MANEAQ5SRI9 462 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 SEL1L3Q68CR1 1132 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 BBS12Q6ZW61 710 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 BZW1Q7L1Q6 419 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 TFAP2DQ7Z6R9 452 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 CIR1Q86X95 450 aaPredicted RBP12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 ZFAND4Q86XD8 727 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 JAMLQ86YT9 394 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 RASGEF1CQ8N431 466 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 PCDH19Q8TAB3 1148 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 ACTRT1Q8TDG2 376 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 HAUS1Q96CS2 278 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 FAF2Q96CS3 445 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 PRMT1Q99873 361 aaKnown RBP12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 SLC12A9Q9BXP2 914 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 LRRC4CQ9HCJ2 640 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 RABGEF1Q9UJ41 708 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 PNMA8BQ9ULN7 279 aaPredicted RBP12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 EFR3BQ9Y2G0 817 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 HEY1Q9Y5J3 304 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 CELSR1Q9NYQ6 3014 aa12.58□□□□□ -0.4
CLSTN3-208ENST00000538933 C1QTNF3-AMACRE9PGA6 284 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 KRIT1O00522 736 aa12.57□□□□□ -0.4
CLSTN3-208ENST00000538933 CLDN11O75508 207 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms