RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 POLR3BQ9NW08 1133 aaPredicted RBP19.29■□□□□ 0.68
VPS28-213ENST00000530983 DSEQ9UL01 958 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 SH3BP1Q9Y3L3 701 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 GTF3C5Q9Y5Q8 519 aaPredicted RBP19.29■□□□□ 0.68
VPS28-213ENST00000530983 ARHGEF37A1IGU5 675 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 ZSCAN9O15535 394 aaPredicted RBP19.29■□□□□ 0.68
VPS28-213ENST00000530983 MGEA5O60502 916 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 IMPDH2P12268 514 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 GPX3P22352 226 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 SLC26A3P40879 764 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 NFKB2Q00653 900 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 CYTH1Q15438 398 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 PITRM1Q5JRX3 1037 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 BORAQ6PGQ7 559 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 PABPC5Q96DU9 382 aaKnown RBP19.29■□□□□ 0.68
VPS28-213ENST00000530983 C1orf74Q96LT6 269 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 NOL11Q9H8H0 719 aaKnown RBP19.29■□□□□ 0.68
VPS28-213ENST00000530983 FNIP2Q9P278 1114 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 KCTD3Q9Y597 815 aa19.29■□□□□ 0.68
VPS28-213ENST00000530983 CDH13P55290 713 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 HERVK_113P63132 956 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 SH3BP2P78314 561 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 TSPY1Q01534 308 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 SIRPB2Q5JXA9 342 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 MARC1Q5VT66 337 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 GDF6Q6KF10 455 aaPredicted RBP19.28■□□□□ 0.68
VPS28-213ENST00000530983 SPATA2LQ8IUW3 424 aaPredicted RBP19.28■□□□□ 0.68
VPS28-213ENST00000530983 ZNF683Q8IZ20 524 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 MYO1HQ8N1T3 1032 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 OR52K2Q8NGK3 314 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 PBXIP1Q96AQ6 731 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 SERPINB11Q96P15 392 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 ERVK-6Q9BXR3 956 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 RHBDL2Q9NX52 303 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 CRYL1Q9Y2S2 319 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 DNAJC15Q9Y5T4 150 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 GMEB1Q9Y692 573 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 PRAMEP78395 509 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 DHFR2Q86XF0 187 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 RBM12BQ8IXT5 1001 aaKnown RBP19.28■□□□□ 0.68
VPS28-213ENST00000530983 ALDH16A1Q8IZ83 802 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 FAM110BQ8TC76 370 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 LRCH3Q96II8 777 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 SYT17Q9BSW7 474 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 AKTIPQ9H8T0 292 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 PRDM5Q9NQX1 630 aaPredicted RBP19.28■□□□□ 0.68
VPS28-213ENST00000530983 RGS18Q9NS28 235 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 HACD3Q9P035 362 aa19.28■□□□□ 0.68
VPS28-213ENST00000530983 SCN10AQ9Y5Y9 1956 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 ZNF839A8K0R7 811 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 PPP6CO00743 305 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 LDB2O43679 373 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 PFDN1O60925 122 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 CNTN5O94779 1100 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 OR4Q2P0C623 313 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 ATP6V1B2P21281 511 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 NDST2P52849 883 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 ALFQ53S48 1182 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 SPRYD7Q5W111 196 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 ZNF549Q6P9A3 640 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 THEM5Q8N1Q8 247 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 TSPAN14Q8NG11 270 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 LZICQ8WZA0 190 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 FATE1Q969F0 183 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 PSMG2Q969U7 264 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 ROPN1LQ96C74 230 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 PTGDR2Q9Y5Y4 395 aa19.27■□□□□ 0.68
VPS28-213ENST00000530983 A0A0J9YVX5 310 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 TIPRLO75663 272 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 ATXN1LP0C7T5 689 aaKnown RBP19.26■□□□□ 0.67
VPS28-213ENST00000530983 CD1DP15813 335 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 NELFEP18615 380 aaKnown RBP19.26■□□□□ 0.67
VPS28-213ENST00000530983 PCSK6P29122 969 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 STX1BP61266 288 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 TIAL1Q01085 375 aaKnown RBP eCLIP19.26■□□□□ 0.67
VPS28-213ENST00000530983 ADRM1Q16186 407 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 CLYBLQ8N0X4 340 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 PGBD5Q8N414 524 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 CANT1Q8WVQ1 401 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 EXT2Q93063 718 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 SLC39A13Q96H72 371 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 GPATCH1Q9BRR8 931 aaKnown RBP19.26■□□□□ 0.67
VPS28-213ENST00000530983 TMEM79Q9BSE2 394 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 MAP10Q9P2G4 905 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 UXTQ9UBK9 157 aaPredicted RBP19.26■□□□□ 0.67
VPS28-213ENST00000530983 GIMAP2Q9UG22 337 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 CIDEBQ9UHD4 219 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 TLR6Q9Y2C9 796 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 CEPT1Q9Y6K0 416 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 A0A0J9YYE9 177 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 ARHGAP10A1A4S6 786 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 H3BSA7 217 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 HTRA2O43464 458 aaPredicted RBP19.26■□□□□ 0.67
VPS28-213ENST00000530983 ZNF623O75123 536 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 SLC4A1P02730 911 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 CDK4P11802 303 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 CKMT2P17540 419 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 CDH2P19022 906 aaPredicted RBP19.26■□□□□ 0.67
VPS28-213ENST00000530983 FDXRP22570 491 aa19.26■□□□□ 0.67
VPS28-213ENST00000530983 SLC5A2P31639 672 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms