RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 HSD11B1LQ7Z5J1 315 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 HORMAD1Q86X24 394 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 TMEFF1Q8IYR6 380 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 MPP5Q8N3R9 675 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 BBOF1Q8ND07 529 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 FBXO25Q8TCJ0 367 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 LYSMD1Q96S90 227 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 ZFYVE1Q9HBF4 777 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 MAGEE1Q9HCI5 957 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 FZD3Q9NPG1 666 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 FAM114A2Q9NRY5 505 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 ZSCAN32Q9NX65 697 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.73□□□□□ -0.21
CD44-224ENST00000526669 CD84Q9UIB8 345 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 FNDC3AQ9Y2H6 1198 aaKnown RBP13.73□□□□□ -0.21
CD44-224ENST00000526669 MUC6Q6W4X9 2439 aa13.73□□□□□ -0.21
CD44-224ENST00000526669 H0Y858 1186 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 CCL22O00626 93 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 HRO43593 1189 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 GM2AP17900 193 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 ETV3P41162 512 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 CARSP49589 748 aaKnown RBP13.72□□□□□ -0.21
CD44-224ENST00000526669 STC1P52823 247 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 PTSQ03393 145 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 DHX9Q08211 1270 aaKnown RBP13.72□□□□□ -0.21
CD44-224ENST00000526669 FGL2Q14314 439 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 HLTFQ14527 1009 aaKnown RBP eCLIP13.72□□□□□ -0.21
CD44-224ENST00000526669 ZNF528Q3MIS6 628 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 KIAA0895LQ68EN5 471 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 KIAA1161Q6NSJ0 714 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 CASC4Q6P4E1 433 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 CES3Q6UWW8 571 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 SLC36A4Q6YBV0 504 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 CEP68Q76N32 757 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 CCDC25Q86WR0 208 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 GSPT2Q8IYD1 628 aaKnown RBP13.72□□□□□ -0.21
CD44-224ENST00000526669 AGGF1Q8N302 714 aaeCLIP13.72□□□□□ -0.21
CD44-224ENST00000526669 PRSS33Q8NF86 280 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 OR13C4Q8NGS5 318 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 GAB3Q8WWW8 586 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 NELL1Q92832 810 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 ART4Q93070 314 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 EID2BQ96D98 161 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 TRIM56Q9BRZ2 755 aaKnown RBP13.72□□□□□ -0.21
CD44-224ENST00000526669 XAB2Q9HCS7 855 aaKnown RBP13.72□□□□□ -0.21
CD44-224ENST00000526669 BFARQ9NZS9 450 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 HACD3Q9P035 362 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 R4GN57 208 aa13.72□□□□□ -0.21
CD44-224ENST00000526669 MEI4A8MW99 385 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 NDC80O14777 642 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 SLC31A1O15431 190 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 TM7SF2O76062 418 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 ZNF30P17039 623 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 NPY2RP49146 381 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 ARL4CP56559 192 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 RPS21P63220 83 aaKnown RBP13.71□□□□□ -0.21
CD44-224ENST00000526669 NAA30Q147X3 362 aaPredicted RBP13.71□□□□□ -0.21
CD44-224ENST00000526669 TAF1AQ15573 450 aaPredicted RBP13.71□□□□□ -0.21
CD44-224ENST00000526669 SMAD1Q15797 465 aaKnown RBP13.71□□□□□ -0.21
CD44-224ENST00000526669 LPAL2Q16609 132 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 TMEM259Q4ZIN3 620 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 ALS2CLQ60I27 953 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 KDM7AQ6ZMT4 941 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 PRR23BQ6ZRT6 265 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 Q6ZVL8 140 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 TRIM69Q86WT6 500 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 ANKMY2Q8IV38 441 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 SLC41A1Q8IVJ1 513 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 PPHLN1Q8NEY8 458 aaKnown RBP13.71□□□□□ -0.21
CD44-224ENST00000526669 OR4K2Q8NGD2 314 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 BRSK1Q8TDC3 778 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 SEC14L1Q92503 715 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 BIRC7Q96CA5 298 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 DNAJC1Q96KC8 554 aaKnown RBP13.71□□□□□ -0.21
CD44-224ENST00000526669 HSPA12BQ96MM6 686 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 FAM126AQ9BYI3 521 aaPredicted RBP13.71□□□□□ -0.21
CD44-224ENST00000526669 KDM4CQ9H3R0 1056 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 ANKZF1Q9H8Y5 726 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 EBF2Q9HAK2 575 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 GDF3Q9NR23 364 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 PKD2L2Q9NZM6 624 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 CHMP2BQ9UQN3 213 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 CA5BQ9Y2D0 317 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 TCAF1Q9Y4C2 921 aa13.71□□□□□ -0.21
CD44-224ENST00000526669 ATXN2Q99700 1313 aaKnown RBP13.7□□□□□ -0.22
CD44-224ENST00000526669 ARHGEF17Q96PE2 2063 aaPredicted RBP13.7□□□□□ -0.22
CD44-224ENST00000526669 SMAPO00193 183 aa13.7□□□□□ -0.22
CD44-224ENST00000526669 STX7O15400 261 aaKnown RBP13.7□□□□□ -0.22
CD44-224ENST00000526669 LDB2O43679 373 aa13.7□□□□□ -0.22
CD44-224ENST00000526669 RECQL5O94762 991 aaPredicted RBP13.7□□□□□ -0.22
CD44-224ENST00000526669 CRTAMO95727 393 aa13.7□□□□□ -0.22
CD44-224ENST00000526669 PAK4O96013 591 aaPredicted RBP13.7□□□□□ -0.22
CD44-224ENST00000526669 IGHV4-34P06331 123 aa13.7□□□□□ -0.22
CD44-224ENST00000526669 MLNP12872 115 aa13.7□□□□□ -0.22
CD44-224ENST00000526669 LPOP22079 712 aaPredicted RBP13.7□□□□□ -0.22
CD44-224ENST00000526669 MAOBP27338 520 aa13.7□□□□□ -0.22
CD44-224ENST00000526669 MAGEA3P43357 314 aa13.7□□□□□ -0.22
CD44-224ENST00000526669 DHPSP49366 369 aaPredicted RBP13.7□□□□□ -0.22
CD44-224ENST00000526669 ZNF140P52738 457 aaPredicted RBP13.7□□□□□ -0.22
CD44-224ENST00000526669 DRG2P55039 364 aaKnown RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms