RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 SYCE3A1L190 88 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 A4D1N5 150 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CTAGE9A4FU28 777 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RGSL1A5PLK6 1076 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HTR3EA5X5Y0 456 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D3BA6NDS4 549 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D3FA6NER0 549 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 URADA6NGE7 173 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ERICH4A6NGS2 130 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRIQ4A6NIV6 560 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRC72A6NJI9 287 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CD8B2A6NJW9 211 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SDR42E2A6NKP2 422 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 A6NL46 340 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 C3orf70A6NLC5 250 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 LRRC53A6NM62 1247 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC38A8A6NNN8 435 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ENO4A6NNW6 628 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF785A8K8V0 405 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CXorf49A8MYA2 514 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNU1A8MYU2 1149 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 A8MZ25 164 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 KPNA7A9QM74 516 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 AHRRA9YTQ3 701 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 BTBD18B2RXH4 712 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HNRNPCL2B2RXH8 293 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM233B4DJY2 109 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ERVV-2B6SEH9 535 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 KCNJ18B7U540 433 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 KIF28PB7ZC32 967 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D3LB9A6J9 549 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 USP17L23D6RBM5 183 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 F8W810 466 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 H0Y8G0 127 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 H0YCG3 227 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 H0YIV9 168 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC188H7C350 402 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SMIM22K7EJ46 135 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 L7N2F9 121 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 M0QX08 132 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 M0QYG6 137 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SGK1O00141 431 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CTDSP2O14595 271 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF213O14771 459 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RASGRF2O14827 1237 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC30A4O14863 429 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SYN3O14994 580 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SMAD9O15198 467 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADAMDEC1O15204 470 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF185O15231 689 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAGEB3O15480 346 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CLDN3O15551 220 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TGFB1I1O43294 461 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CTIFO43310 598 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 DHHO43323 396 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CA12O43570 354 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HCRTR2O43614 444 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RGS10O43665 173 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPOPO43791 374 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC25A17O43808 307 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RRP9O43818 475 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SSX5O60225 188 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HS6ST1O60243 411 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCNT1O60563 726 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TLR2O60603 784 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 KLHL41O60662 606 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PAGE4O60829 102 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 MITFO75030 526 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CBFA2T3O75081 653 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 LDB3O75112 727 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 E2F6O75461 281 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 TADA2AO75478 443 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPC4O75487 556 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 NDUFS3O75489 264 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RBMXL2O75526 392 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 DAB1O75553 588 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CRCPO75575 148 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPAG6O75602 509 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRDM1O75626 825 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLC25A12O75746 678 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RPP40O75818 363 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 PSMD10O75832 226 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 IDH1O75874 414 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 BBOX1O75936 387 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SLITRK3O94933 977 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 WDR47O94967 919 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HEXIM1O94992 359 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RASAL1O95294 804 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 IPO7O95373 1038 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ADCY5O95622 1261 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 KRT8P05787 483 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 URODP06132 367 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 RB1P06400 928 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZFYP08048 801 aaPredicted RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CHRM2P08172 466 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CHRM4P08173 479 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 SRPRAP08240 638 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 VIMP08670 466 aaKnown RBP0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 CYP3A4P08684 503 aa0.59□□□□□ -2.31
RNU4-54P-201ENST00000516428 HOXB5P09067 269 aa0.59□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms