RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 TADA1Q96BN2 335 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 OR52E6Q96RD3 313 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 AHSPQ9NZD4 102 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 H3BMM5 538 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 MAP3K13O43283 966 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 KRT20P35900 424 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 ARL4DP49703 201 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 USP46P62068 366 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 BNIP2Q12982 314 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 GPR180Q86V85 440 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 HOMEZQ8IX15 550 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 NIPA2Q8N8Q9 360 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 MTMR14Q8NCE2 650 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 ADCY4Q8NFM4 1077 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 HEXDCQ8WVB3 486 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 DGCR14Q96DF8 476 aaKnown RBP12.69□□□□□ -0.38
USP53-209ENST00000514665 BORCS6Q96GS4 357 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 SNX27Q96L92 541 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 GPR21Q99679 349 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 REXO4Q9GZR2 422 aaKnown RBP12.69□□□□□ -0.38
USP53-209ENST00000514665 POLR3HQ9Y535 204 aaPredicted RBP12.69□□□□□ -0.38
USP53-209ENST00000514665 PCDHGC4Q9Y5F7 938 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 ANKRD12Q6UB98 2062 aa12.69□□□□□ -0.38
USP53-209ENST00000514665 COL1A2P08123 1366 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 SNTNA6NMZ2 147 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 HCRTO43612 131 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 TOP3BO95985 862 aaKnown RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 PKMP14618 531 aaKnown RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 CENPAP49450 140 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 EIF2B2P49770 351 aaKnown RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 SETMARQ53H47 684 aaPredicted RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 LINGO4Q6UY18 593 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 OR7A2PQ8NGA2 310 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 SCAMP5Q8TAC9 235 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 CLK4Q9HAZ1 481 aaKnown RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 SNX6Q9UNH7 406 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 LMO7Q8WWI1 1683 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 NPEPPSL1A6NEC2 478 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 MED26O95402 600 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 PRKAR2AP13861 404 aaKnown RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 TTKP33981 857 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 DPYSL2Q16555 572 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 PABPC1LQ4VXU2 614 aaKnown RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 ARMCX4Q5H9R4 360 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 DGKKQ5KSL6 1271 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 ZNF618Q5T7W0 954 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 BROXQ5VW32 411 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 ARMC6Q6NXE6 501 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 ZCCHC8Q6NZY4 707 aaKnown RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 CASP12Q6UXS9 341 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 ZNF513Q8N8E2 541 aaPredicted RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 OR7D4Q8NG98 312 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 BTN2A3PQ96KV6 586 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 UROC1Q96N76 676 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 PANX1Q96RD7 426 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 RNF39Q9H2S5 420 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 NOL6Q9H6R4 1146 aaKnown RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 RBPJLQ9UBG7 517 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 GNPTGQ9UJJ9 305 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 ITM2BQ9Y287 266 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 TCAF1Q9Y4C2 921 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 GMPPBQ9Y5P6 360 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 PRMT5O14744 637 aaPredicted RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 PIGRP01833 764 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 GSNP06396 782 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 FLT3LGP49771 235 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 ABRQ12979 859 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 ZYG11AQ6WRX3 759 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 ZNF605Q86T29 641 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 PGAM4Q8N0Y7 254 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 DDX1Q92499 740 aaKnown RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 DNAJC1Q96KC8 554 aaKnown RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 PLEKHG4BQ96PX9 1271 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 COPS8Q99627 209 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 MRPS26Q9BYN8 205 aaKnown RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 DNAJC28Q9NX36 388 aa12.68□□□□□ -0.38
USP53-209ENST00000514665 RSL24D1Q9UHA3 163 aaKnown RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 CAB39Q9Y376 341 aaPredicted RBP12.68□□□□□ -0.38
USP53-209ENST00000514665 TRIM24O15164 1050 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 ADCY6O43306 1168 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 ITM2AO43736 263 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 SNAP91O60641 907 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 CYP4B1P13584 511 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 OLIG2Q13516 323 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 INAQ16352 499 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 SPANXN2Q5MJ10 180 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 UTS2BQ765I0 119 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 TSEN34Q9BSV6 310 aaKnown RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 ZCCHC2Q9C0B9 1178 aaKnown RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 ATP13A3Q9H7F0 1226 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 NKX1-2Q9UD57 310 aaPredicted RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 STK39Q9UEW8 545 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 SLIT2O94813 1529 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 RNASEH1O60930 286 aaKnown RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 AQP4P55087 323 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 SNRPD1P62314 119 aaKnown RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 IRF9Q00978 393 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 SPIDRQ14159 915 aa12.67□□□□□ -0.38
USP53-209ENST00000514665 TRIP4Q15650 581 aaPredicted RBP12.67□□□□□ -0.38
USP53-209ENST00000514665 DGUOKQ16854 277 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms