RNA–Protein interactions for RNA: ENST00000504807.5

DDX41-204, Transcript of DEAD-box helicase 41, humanhuman

TSL 2

Gene DDX41, Length 794 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-204ENST00000504807 MAPK15Q8TD08 544 aa13.18□□□□□ -0.3
DDX41-204ENST00000504807 TRIM11Q96F44 468 aa13.18□□□□□ -0.3
DDX41-204ENST00000504807 ATXN7L3BQ96GX2 97 aa13.18□□□□□ -0.3
DDX41-204ENST00000504807 COQ10AQ96MF6 247 aa13.18□□□□□ -0.3
DDX41-204ENST00000504807 MGME1Q9BQP7 344 aa13.18□□□□□ -0.3
DDX41-204ENST00000504807 DUSP23Q9BVJ7 150 aa13.18□□□□□ -0.3
DDX41-204ENST00000504807 ATP13A3Q9H7F0 1226 aa13.18□□□□□ -0.3
DDX41-204ENST00000504807 MRPL47Q9HD33 250 aaKnown RBP13.18□□□□□ -0.3
DDX41-204ENST00000504807 SIRPGQ9P1W8 387 aa13.18□□□□□ -0.3
DDX41-204ENST00000504807 SPASTQ9UBP0 616 aa13.18□□□□□ -0.3
DDX41-204ENST00000504807 ENTPD2Q9Y5L3 495 aa13.18□□□□□ -0.3
DDX41-204ENST00000504807 ST14Q9Y5Y6 855 aa13.18□□□□□ -0.3
DDX41-204ENST00000504807 FBN2P35556 2912 aa13.18□□□□□ -0.3
DDX41-204ENST00000504807 ITPR2Q14571 2701 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 NPIPB15A6NHN6 443 aaPredicted RBP13.17□□□□□ -0.3
DDX41-204ENST00000504807 PDHA1P08559 390 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 SUOXP51687 545 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 SRP54P61011 504 aaKnown RBP13.17□□□□□ -0.3
DDX41-204ENST00000504807 DPYSL3Q14195 570 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 PTK2BQ14289 1009 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 RFTN1Q14699 578 aaPredicted RBP13.17□□□□□ -0.3
DDX41-204ENST00000504807 NR0B2Q15466 257 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 ISXQ2M1V0 245 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 ASTE1Q2TB18 679 aaPredicted RBP13.17□□□□□ -0.3
DDX41-204ENST00000504807 ERAP2Q6P179 960 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 ALKBH5Q6P6C2 394 aaKnown RBP13.17□□□□□ -0.3
DDX41-204ENST00000504807 TMCO3Q6UWJ1 677 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 HSD11B1LQ7Z5J1 315 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 B3GNT8Q7Z7M8 397 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 BTN2A2Q8WVV5 523 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 TEKT4Q8WW24 435 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 TBATAQ96M53 351 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 NUDCD1Q96RS6 583 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 IL12RB2Q99665 862 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 NBASA2RRP1 2371 aa13.17□□□□□ -0.3
DDX41-204ENST00000504807 SPTBN1Q01082 2364 aaKnown RBP13.16□□□□□ -0.3
DDX41-204ENST00000504807 C2CD3Q4AC94 2353 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 ALPIP09923 528 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 CTPS1P17812 591 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 RBMS1P29558 406 aaKnown RBP13.16□□□□□ -0.3
DDX41-204ENST00000504807 GJC1P36383 396 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 TRIM23P36406 574 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 PEX5P50542 639 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 CDH6P55285 790 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 AP1S1P61966 158 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 SLC10A2Q12908 348 aaPredicted RBP13.16□□□□□ -0.3
DDX41-204ENST00000504807 MTM1Q13496 603 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 PIGHQ14442 188 aaPredicted RBP13.16□□□□□ -0.3
DDX41-204ENST00000504807 GRM3Q14832 879 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 NFKBIBQ15653 356 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 BOLA3Q53S33 107 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 C3orf38Q5JPI3 329 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 CCDC122Q5T0U0 273 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 PQLC3Q8N755 202 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 SPOCK2Q92563 424 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 CCDC74AQ96AQ1 378 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 WDR92Q96MX6 357 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 ZNF599Q96NL3 588 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 DEPDC7Q96QD5 511 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 RBM15Q96T37 977 aaKnown RBP eCLIP13.16□□□□□ -0.3
DDX41-204ENST00000504807 CCDC3Q9BQI4 270 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 C1QTNF7Q9BXJ2 289 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 SLC13A1Q9BZW2 595 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 KLQ9UEF7 1012 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 PADI4Q9UM07 663 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 SATB2Q9UPW6 733 aa13.16□□□□□ -0.3
DDX41-204ENST00000504807 A0A1W2PQM1 296 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 NTN3O00634 580 aaPredicted RBP13.15□□□□□ -0.3
DDX41-204ENST00000504807 FZD6O60353 706 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 HEXIM1O94992 359 aaKnown RBP13.15□□□□□ -0.3
DDX41-204ENST00000504807 SOD1P00441 154 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 CPP00450 1065 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 ANXA6P08133 673 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 ELFN1P0C7U0 828 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 DESP17661 470 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 HNRNPH3P31942 346 aaKnown RBP13.15□□□□□ -0.3
DDX41-204ENST00000504807 ARL4AP40617 200 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 ETV3P41162 512 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 DUSP3P51452 185 aaPredicted RBP13.15□□□□□ -0.3
DDX41-204ENST00000504807 KIAA1024LP59773 190 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 GBE1Q04446 702 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 CLN3Q13286 438 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 ZNF235Q14590 738 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 IGFBP7Q16270 282 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 HS1BP3Q53T59 392 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 CFAP58Q5T655 872 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 DENND2CQ68D51 928 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 ESRP1Q6NXG1 681 aaKnown RBP13.15□□□□□ -0.3
DDX41-204ENST00000504807 PNCKQ6P2M8 343 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 TMPRSS9Q7Z410 1059 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 NRROSQ86YC3 692 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.15□□□□□ -0.3
DDX41-204ENST00000504807 LZTR1Q8N653 840 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 TEX26Q8N6G2 289 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 ZNF564Q8TBZ8 553 aaPredicted RBP13.15□□□□□ -0.3
DDX41-204ENST00000504807 PDCD6IPQ8WUM4 868 aaKnown RBP13.15□□□□□ -0.3
DDX41-204ENST00000504807 PIH1D2Q8WWB5 315 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 CCDC97Q96F63 343 aaPredicted RBP13.15□□□□□ -0.3
DDX41-204ENST00000504807 TMEM168Q9H0V1 697 aa13.15□□□□□ -0.3
DDX41-204ENST00000504807 USP29Q9HBJ7 922 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms