RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 TCAF2A6NFQ2 919 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 C2orf81A6NN90 581 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 TBKBP1A7MCY6 615 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 KIF1CO43896 1103 aaKnown RBP11.99□□□□□ -0.49
NUP54-202ENST00000502850 PEX1O43933 1283 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 SOAT2O75908 522 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 VNN2O95498 520 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 LATS1O95835 1130 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 RHOCP08134 193 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 SYN1P17600 705 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 ATF6P18850 670 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 HOXD9P28356 352 aaPredicted RBP11.99□□□□□ -0.49
NUP54-202ENST00000502850 ABL2P42684 1182 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 STC1P52823 247 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 ATP6V0D1P61421 351 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 HERVK_113P63132 956 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 ZNF177Q13360 481 aaPredicted RBP11.99□□□□□ -0.49
NUP54-202ENST00000502850 PDAP1Q13442 181 aaKnown RBP11.99□□□□□ -0.49
NUP54-202ENST00000502850 TAF1AQ15573 450 aaPredicted RBP11.99□□□□□ -0.49
NUP54-202ENST00000502850 LRRC26Q2I0M4 334 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 CAPRIN2Q6IMN6 1127 aaKnown RBP11.99□□□□□ -0.49
NUP54-202ENST00000502850 IZUMO2Q6UXV1 221 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 CIR1Q86X95 450 aaPredicted RBP11.99□□□□□ -0.49
NUP54-202ENST00000502850 PELI3Q8N2H9 469 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 GIPC2Q8TF65 315 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 PPP2R3CQ969Q6 453 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 DNAJC1Q96KC8 554 aaKnown RBP11.99□□□□□ -0.49
NUP54-202ENST00000502850 TBATAQ96M53 351 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 TRIB3Q96RU7 358 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 GDF15Q99988 308 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 ERVK-6Q9BXR3 956 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 KLHL4Q9C0H6 718 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 CRISPLD1Q9H336 500 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 TRPM5Q9NZQ8 1165 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 EPS15L1Q9UBC2 864 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 AFF4Q9UHB7 1163 aaKnown RBP11.99□□□□□ -0.49
NUP54-202ENST00000502850 PPM1HQ9ULR3 514 aa11.99□□□□□ -0.49
NUP54-202ENST00000502850 CCDC162PA2VCL2 907 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 SYCE1LA8MT33 242 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 CASQ2O14958 399 aaPredicted RBP11.98□□□□□ -0.49
NUP54-202ENST00000502850 UBDO15205 165 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 INSIG1O15503 277 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 GPC4O75487 556 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 PYGLP06737 847 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 CD1DP15813 335 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 ZNF37AP17032 561 aaPredicted RBP11.98□□□□□ -0.49
NUP54-202ENST00000502850 ME2P23368 584 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 PSMA3P25788 255 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 BMP8BP34820 402 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 CCR10P46092 362 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 ARSDP51689 593 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 KCNQ1P51787 676 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 CDKN2DP55273 166 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 STX1BP61266 288 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 VEPH1Q14D04 833 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 ZNF789Q5FWF6 425 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 AARS2Q5JTZ9 985 aaKnown RBP11.98□□□□□ -0.49
NUP54-202ENST00000502850 ZNF678Q5SXM1 525 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 GPR158Q5T848 1215 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 TPGS2Q68CL5 300 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 RSPO2Q6UXX9 243 aaPredicted RBP11.98□□□□□ -0.49
NUP54-202ENST00000502850 EFL1Q7Z2Z2 1120 aaKnown RBP11.98□□□□□ -0.49
NUP54-202ENST00000502850 KBTBD6Q86V97 674 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 HPS6Q86YV9 775 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 HERC6Q8IVU3 1022 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 SPATA6LQ8N4H0 392 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 RIN3Q8TB24 985 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 PIP4K2CQ8TBX8 421 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 TOP1MTQ969P6 601 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 RCN3Q96D15 328 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 B3GALT6Q96L58 329 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 PPP1R36Q96LQ0 422 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 AARSD1Q9BTE6 412 aaKnown RBP11.98□□□□□ -0.49
NUP54-202ENST00000502850 ADGRE3Q9BY15 652 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 ALG9Q9H6U8 611 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 WDR41Q9HAD4 459 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 CYP4F12Q9HCS2 524 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 SCUBE2Q9NQ36 999 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 PSMD13Q9UNM6 376 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 MRPL42Q9Y6G3 142 aaKnown RBP11.98□□□□□ -0.49
NUP54-202ENST00000502850 COMMD10Q9Y6G5 202 aa11.98□□□□□ -0.49
NUP54-202ENST00000502850 ZFP37Q9Y6Q3 630 aaPredicted RBP11.98□□□□□ -0.49
NUP54-202ENST00000502850 TYW5A2RUC4 315 aaKnown RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 ZNF840PA6NDX5 716 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 A6NHS1 94 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 GOLGA8CPA6NN73 597 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 ZMPSTE24O75844 475 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 PDHA1P08559 390 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 CD9P21926 228 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 ALDH7A1P49419 539 aaKnown RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 ZNF140P52738 457 aaPredicted RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 CDC16Q13042 620 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 FLOT2Q14254 428 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 GALNT3Q14435 633 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 TAF12Q16514 161 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 PIGGQ5H8A4 983 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 TCHHL1Q5QJ38 904 aaPredicted RBP11.97□□□□□ -0.49
NUP54-202ENST00000502850 GLT6D1Q7Z4J2 308 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 ISCA2Q86U28 154 aa11.97□□□□□ -0.49
NUP54-202ENST00000502850 CLYBLQ8N0X4 340 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms