RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ETFBP38117 255 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 GSSP48637 474 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 PLA2G16P53816 162 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 SLC12A2P55011 1212 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 EEFSECP57772 596 aaKnown RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 IGBP1P78318 339 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 BFSP2Q13515 415 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 TNFAIP1Q13829 316 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 ZNF460Q14592 562 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 ACAP2Q15057 778 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 THOC7Q6I9Y2 204 aaKnown RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 FKBP9P1Q75LS8 142 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 KRT27Q7Z3Y8 459 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 ANKRD13BQ86YJ7 626 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 CRYBG2Q8N1P7 616 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 MIER2Q8N344 545 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 LRRC52Q8N7C0 313 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 MAGEE2Q8TD90 523 aaPredicted RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 DPF3Q92784 378 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 ELMO2Q96JJ3 720 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 RMND5AQ9H871 391 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 GPRC5DQ9NZD1 345 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 GMPR2Q9P2T1 348 aaKnown RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 EGFL7Q9UHF1 273 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 ERVK-11Q9UQG0 969 aa9.7□□□□□ -0.86
SYNE1-230ENST00000495090 AAR2Q9Y312 384 aaKnown RBP9.7□□□□□ -0.86
SYNE1-230ENST00000495090 H0Y858 1186 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 NR5A2O00482 541 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 WNT10BO00744 389 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 SYNCRIPO60506 623 aaKnown RBP9.69□□□□□ -0.86
SYNE1-230ENST00000495090 TPST1O60507 370 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 UGT2B11O75310 529 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 RAD17O75943 681 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 PRSS23O95084 383 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 FGF4P08620 206 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 CPB1P15086 417 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 CAPN3P20807 821 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 EEF1B2P24534 225 aaKnown RBP9.69□□□□□ -0.86
SYNE1-230ENST00000495090 YWHAQP27348 245 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 ARNTP27540 789 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 SLC26A3P40879 764 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 SLC1A2P43004 574 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 YAP1P46937 504 aaKnown RBP9.69□□□□□ -0.86
SYNE1-230ENST00000495090 ALDH3A2P51648 485 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 EPS8Q12929 822 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 GRIK2Q13002 908 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 TOP3AQ13472 1001 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-230ENST00000495090 INAQ16352 499 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 UGT3A2Q3SY77 523 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 BTBD8Q5XKL5 378 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 KIAA0930Q6ICG6 404 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-230ENST00000495090 TAF2Q6P1X5 1199 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 THAP5Q7Z6K1 395 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 GALNT7Q86SF2 657 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 PROSER1Q86XN7 944 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 DENND6AQ8IWF6 608 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 TP53INP2Q8IXH6 220 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 DCP1BQ8IZD4 617 aaKnown RBP9.69□□□□□ -0.86
SYNE1-230ENST00000495090 CLYBLQ8N0X4 340 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 SPARTQ8N0X7 666 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 ZNF280CQ8ND82 737 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 PPHLN1Q8NEY8 458 aaKnown RBP9.69□□□□□ -0.86
SYNE1-230ENST00000495090 FLAD1Q8NFF5 587 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 BPIFB6Q8NFQ5 453 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 BPIFB1Q8TDL5 484 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 MUL1Q969V5 352 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 TMEM125Q96AQ2 219 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 TSPAN17Q96FV3 270 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 AURKBQ96GD4 344 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-230ENST00000495090 TSGA13Q96PP4 275 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 PPP1R2P1Q96PQ5 205 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 SLC2A13Q96QE2 648 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 GPR20Q99678 358 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 CDHR5Q9HBB8 845 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 TLR9Q9NR96 1032 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 FBXO8Q9NRD0 319 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 SDR39U1Q9NRG7 319 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-230ENST00000495090 TRPC5Q9UL62 973 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-230ENST00000495090 FIS1Q9Y3D6 152 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 NAALAD2Q9Y3Q0 740 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 PLXNA1Q9UIW2 1896 aa9.69□□□□□ -0.86
SYNE1-230ENST00000495090 NEMP2A6NFY4 417 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 C19orf81C9J6K1 198 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 INPP4BO15327 924 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 HBP1O60381 514 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 BCAS1O75363 584 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-230ENST00000495090 TULP3O75386 442 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 NCAM1P13591 858 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 ARSAP15289 507 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 TPH1P17752 444 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 ITIH1P19827 911 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 KCNA5P22460 613 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 HTR1EP28566 365 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 ADRA1BP35368 520 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 GSK3BP49841 420 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 CLCN5P51795 746 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 ARSFP54793 590 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 ILF2Q12905 390 aaKnown RBP9.68□□□□□ -0.86
SYNE1-230ENST00000495090 CTBP1Q13363 440 aa9.68□□□□□ -0.86
SYNE1-230ENST00000495090 CSHL1Q14406 222 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms