RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 CYP4F2P78329 520 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 IL10RBQ08334 325 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 SLC10A7Q0GE19 358 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 HLTFQ14527 1009 aaKnown RBP eCLIP12.66□□□□□ -0.38
SKA1-205ENST00000494518 ZNF235Q14590 738 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 LBRQ14739 615 aaKnown RBP12.66□□□□□ -0.38
SKA1-205ENST00000494518 C16orf72Q14CZ0 275 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 CNGA3Q16281 694 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 STX1AQ16623 288 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 SMTNL2Q2TAL5 461 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 LINC00303Q3SY05 128 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 MANEAQ5SRI9 462 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 PNCKQ6P2M8 343 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 OGFOD3Q6PK18 319 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 RBM43Q6ZSC3 357 aaKnown RBP12.66□□□□□ -0.38
SKA1-205ENST00000494518 IRF2BP2Q7Z5L9 587 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 HEATR4Q86WZ0 1026 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 AOPEPQ8N6M6 819 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 RCBTB1Q8NDN9 531 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 NUS1Q96E22 293 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 SYT11Q9BT88 431 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 HSD3B7Q9H2F3 369 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 PARVAQ9NVD7 372 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 ETNK2Q9NVF9 386 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 ANO10Q9NW15 660 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 DONSONQ9NYP3 566 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 CWC15Q9P013 229 aaKnown RBP12.66□□□□□ -0.38
SKA1-205ENST00000494518 SEPT3Q9UH03 358 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 APPL1Q9UKG1 709 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 PCDHGC4Q9Y5F7 938 aa12.66□□□□□ -0.38
SKA1-205ENST00000494518 DOPEY2Q9Y3R5 2298 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 LRRC53A6NM62 1247 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 C9orf172C9J069 976 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 B4GAT1O43505 415 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 RNF8O76064 485 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 CPP00450 1065 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 LIPCP11150 499 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 TCF4P15884 667 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 WT1P19544 449 aaPredicted RBP12.65□□□□□ -0.38
SKA1-205ENST00000494518 ALDH4A1P30038 563 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 ETV3P41162 512 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 GNPDA1P46926 289 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 POLD2P49005 469 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 MAXP61244 160 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 POLR2LP62875 67 aaKnown RBP12.65□□□□□ -0.38
SKA1-205ENST00000494518 ZFP36L1Q07352 338 aaKnown RBP12.65□□□□□ -0.38
SKA1-205ENST00000494518 NCAPHQ15003 741 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 ASIC2Q16515 512 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 TMCO4Q5TGY1 634 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 E4F1Q66K89 784 aaPredicted RBP12.65□□□□□ -0.38
SKA1-205ENST00000494518 PLEKHA7Q6IQ23 1121 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 DOK6Q6PKX4 331 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 SLC30A9Q6PML9 568 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 NRROSQ86YC3 692 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 SLITRK4Q8IW52 837 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 ZDHHC1Q8WTX9 485 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 ZNF653Q96CK0 615 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 SGF29Q96ES7 293 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 COQ10AQ96MF6 247 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 SMIM14Q96QK8 99 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 NUDT22Q9BRQ3 303 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 ARHGAP9Q9BRR9 750 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 PHPT1Q9NRX4 125 aaPredicted RBP12.65□□□□□ -0.38
SKA1-205ENST00000494518 MYO1AQ9UBC5 1043 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 CNOT8Q9UFF9 292 aaKnown RBP12.65□□□□□ -0.38
SKA1-205ENST00000494518 PLEKHM1Q9Y4G2 1056 aa12.65□□□□□ -0.38
SKA1-205ENST00000494518 CFAP69A5D8W1 941 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 TMEM191CA6NGB0 347 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 CYSRT1A8MQ03 144 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 RHPN2P1A8MT19 583 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 TNFRSF10CO14798 259 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 NVLO15381 856 aaKnown RBP12.64□□□□□ -0.39
SKA1-205ENST00000494518 LRCH4O75427 683 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 ECEL1O95672 775 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 FUCA1P04066 466 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 FAM87AP0C7U9 286 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 CCDC172P0C7W6 258 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 MYCLP1P12525 358 aaPredicted RBP12.64□□□□□ -0.39
SKA1-205ENST00000494518 CCL4P13236 92 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 CCNB1P14635 433 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 CTPS1P17812 591 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 LHCGRP22888 699 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 AMPD1P23109 780 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 MPSTP25325 297 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 VIPR1P32241 457 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 TRIM23P36406 574 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 AP1S1P61966 158 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 B4GALNT1Q00973 533 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 NSUN2Q08J23 767 aaKnown RBP eCLIP12.64□□□□□ -0.39
SKA1-205ENST00000494518 TRAF2Q12933 501 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 BIRC2Q13490 618 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 DPYSQ14117 519 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 RFTN1Q14699 578 aaPredicted RBP12.64□□□□□ -0.39
SKA1-205ENST00000494518 NKAIN2Q5VXU1 208 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 RFLNAQ6ZTI6 216 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 ZNF571Q7Z3V5 609 aaPredicted RBP12.64□□□□□ -0.39
SKA1-205ENST00000494518 HSD11B1LQ7Z5J1 315 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 TSPAN33Q86UF1 283 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 PGBD5Q8N414 524 aa12.64□□□□□ -0.39
SKA1-205ENST00000494518 FNIP1Q8TF40 1166 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms