RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 KRT36O76013 467 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 COX4I1P13073 169 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 HNRNPLP14866 589 aaKnown RBP eCLIP21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 PDCD2Q16342 344 aaPredicted RBP21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 SH2D4BQ5SQS7 431 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 TXNDC8Q6A555 127 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 AFTPHQ6ULP2 937 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 Q6ZNB5 142 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 HJURPQ8NCD3 748 aaPredicted RBP21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 TACO1Q9BSH4 297 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 AARSD1Q9BTE6 412 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 POPDC3Q9HBV1 291 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 INTS10Q9NVR2 710 aaKnown RBP21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 LHX3Q9UBR4 397 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 A0A088AWK7 358 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 PMLP29590 882 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 KCNC1P48547 511 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 PLK1P53350 603 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 TRAF2Q12933 501 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 ITIH5Q86UX2 942 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 SLC22A9Q8IVM8 553 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 PTERQ96BW5 349 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 ZBED2Q9BTP6 218 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 ZNF385DQ9H6B1 395 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 MAFFQ9ULX9 164 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 OR51B4Q9Y5P0 310 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 CPQQ9Y646 472 aa21.11■□□□□ 0.97
CCDC88B-208ENST00000492980 LOC100653049A0A140TA62 436 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 CIB2O75838 187 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 KRT34O76011 436 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 LUC7L3O95232 432 aaKnown RBP21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 PSMG1O95456 288 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 SPATA31D3P0C874 917 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 CSF2RAP15509 400 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 CD1DP15813 335 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 SP100P23497 879 aaPredicted RBP21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 SULT2A1Q06520 285 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 NCEH1Q6PIU2 408 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 SPATA31D4Q6ZUB0 917 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 FRMD7Q6ZUT3 714 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 CFAP61Q8NHU2 1237 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 FEM1AQ9BSK4 669 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 GTSE1Q9NYZ3 720 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 MCM8Q9UJA3 840 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 C2orf81A6NN90 581 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 F8W8V4 182 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 LILRB3O75022 631 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 CDC25CP30307 473 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 RCN1Q15293 331 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 TRMT5Q32P41 509 aaKnown RBP21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 RALGPS1Q5JS13 557 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 CPSF7Q8N684 471 aaKnown RBP21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 PHF21BQ96EK2 531 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 PANX3Q96QZ0 392 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 VPS28Q9UK41 221 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 SSX2IPQ9Y2D8 614 aa21.1■□□□□ 0.97
CCDC88B-208ENST00000492980 ANKRD66B4E2M5 251 aa21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 ZNF37AP17032 561 aaPredicted RBP21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 HDCP19113 662 aa21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 ITGAXP20702 1163 aa21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 PIK3R1P27986 724 aa21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 PEX6Q13608 980 aa21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 PABPC1LQ4VXU2 614 aaKnown RBP21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 INO80DQ53TQ3 878 aaPredicted RBP21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 RIPOR1Q6ZS17 1223 aa21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 RPS27LQ71UM5 84 aaKnown RBP21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 WFDC5Q8TCV5 224 aa21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 LPGAT1Q92604 370 aa21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 TMA16Q96EY4 203 aaKnown RBP21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 MAELQ96JY0 434 aaKnown RBP21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 LENG8Q96PV6 779 aaPredicted RBP21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 ADGRE3Q9BY15 652 aa21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 POLR3BQ9NW08 1133 aaPredicted RBP21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 PTPRSQ13332 1948 aa21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 GBF1Q92538 1859 aa21.09■□□□□ 0.97
CCDC88B-208ENST00000492980 LPOP22079 712 aaPredicted RBP21.08■□□□□ 0.97
CCDC88B-208ENST00000492980 CSKP41240 450 aa21.08■□□□□ 0.97
CCDC88B-208ENST00000492980 CUL3Q13618 768 aa21.08■□□□□ 0.97
CCDC88B-208ENST00000492980 FAM217AQ8IXS0 508 aa21.08■□□□□ 0.97
CCDC88B-208ENST00000492980 STMN2Q93045 179 aa21.08■□□□□ 0.97
CCDC88B-208ENST00000492980 ALG14Q96F25 216 aa21.08■□□□□ 0.97
CCDC88B-208ENST00000492980 GSTO2Q9H4Y5 243 aa21.08■□□□□ 0.97
CCDC88B-208ENST00000492980 EML4Q9HC35 981 aaKnown RBP21.08■□□□□ 0.97
CCDC88B-208ENST00000492980 PCDH10Q9P2E7 1040 aa21.08■□□□□ 0.97
CCDC88B-208ENST00000492980 VPS51Q9UID3 782 aa21.08■□□□□ 0.97
CCDC88B-208ENST00000492980 DENND4CQ5VZ89 1909 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 TYW5A2RUC4 315 aaKnown RBP21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 CARNS1A5YM72 827 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 TRPC5OSA6NMA1 111 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 SDHDO14521 159 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 SLC22A2O15244 555 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 TIMP1P01033 207 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 CD1EP15812 388 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 IMPDH1P20839 514 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 PPARGP37231 505 aaPredicted RBP21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 ABL2P42684 1182 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 NFKB2Q00653 900 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 LRRC26Q2I0M4 334 aa21.08■□□□□ 0.96
CCDC88B-208ENST00000492980 TMEM198Q66K66 360 aa21.08■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms