RNA–Protein interactions for RNA: ENST00000489247.1

ATG4A-208, Transcript of autophagy related 4A cysteine peptidase, human

TSL 2

Gene ATG4A, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATG4A-208	ENST00000489247	SLC1A5	Q15758	541 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	MGAT5B	Q3V5L5	792 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	ANKRD20A4	Q4UJ75	823 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	ANKRD39	Q53RE8	183 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	C2orf27A	Q580R0	203 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	FAM133B	Q5BKY9	247 aa	Known RBP	5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	PCID2	Q5JVF3	399 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	C10orf120	Q5SQS8	335 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	GRTP1	Q5TC63	336 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	SDHAF4	Q5VUM1	108 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	EGFLAM	Q63HQ2	1017 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	NADSYN1	Q6IA69	706 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	CGB2	Q6NT52	195 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	RWDD4	Q6NW29	188 aa	Known RBP	5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	FBXL22	Q6P050	247 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	PRSS55	Q6UWB4	352 aa	Predicted RBP	5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	PACS1	Q6VY07	963 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	ARHGAP36	Q6ZRI8	547 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	CHST9	Q7L1S5	443 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	RTL10	Q7L3V2	364 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	UBE2Q1	Q7Z7E8	422 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	CPLX4	Q7Z7G2	160 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	GALNT7	Q86SF2	657 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	LCA5	Q86VQ0	697 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	CEP57	Q86XR8	500 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	FAM217A	Q8IXS0	508 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	C4orf33	Q8N1A6	199 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	CCDC33	Q8N5R6	958 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	PPM1N	Q8N819	430 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	ANKRD42	Q8N9B4	389 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	CCT6B	Q92526	530 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	CDKL2	Q92772	493 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	PEX13	Q92968	403 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	IMP4	Q96G21	291 aa	Known RBP	5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	CERS2	Q96G23	380 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	CFAP36	Q96G28	342 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	SERAC1	Q96JX3	654 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	B3GALT6	Q96L58	329 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	TGS1	Q96RS0	853 aa	Known RBP	5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	CPNE1	Q99829	537 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	SIK2	Q9H0K1	926 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	C11orf49	Q9H6J7	331 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	KIF9	Q9HAQ2	790 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	PDF	Q9HBH1	243 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	KCNK9	Q9NPC2	374 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	SYBU	Q9NX95	663 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	GFOD1	Q9NXC2	390 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	NSMCE4A	Q9NXX6	385 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	SEPT10	Q9P0V9	454 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	UXT	Q9UBK9	157 aa	Predicted RBP	5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	IPO11	Q9UI26	975 aa	Known RBP	5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	DUSP13	Q9UII6	198 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	RIMKLB	Q9ULI2	386 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	PLLP	Q9Y342	182 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	RRP15	Q9Y3B9	282 aa	Known RBP	5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	USP15	Q9Y4E8	981 aa	Predicted RBP	5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	YIPF1	Q9Y548	306 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	ASB3	Q9Y575	518 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	PCDHB12	Q9Y5F1	795 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	NR2E3	Q9Y5X4	410 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	MAD1L1	Q9Y6D9	718 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	IKBKG	Q9Y6K9	419 aa		5.61	□□□□□ -1.51
ATG4A-208	ENST00000489247	GOLGA6L7	A0A1B0GV03	622 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	LOC285095	A0A1B0GVY8	99 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247		A0A1W2PQU0	124 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	SLC12A8	A0AV02	714 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	TRIM43B	A6NCK2	446 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	CCT8L1P	A6NM43	557 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	TCP11X1	B4DZS4	312 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	NT5C1B-RDH14	C9J2C7	533 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	AGRP	O00253	132 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	TBX1	O43435	398 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	ACSL4	O60488	711 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	LPXN	O60711	386 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	PRAMEF11	O60813	436 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	RAMP2	O60895	175 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	CLDN11	O75508	207 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	PPM1B	O75688	479 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	SOAT2	O75908	522 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	CNTN5	O94779	1100 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	FSBP	O95073	299 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	PAPSS2	O95340	614 aa	Predicted RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	SEC24A	O95486	1093 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	TBX18	O95935	607 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	HLA-DQB2	P05538	268 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	TACR2	P21452	398 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	ITGB8	P26012	769 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	HOXD9	P28356	352 aa	Predicted RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	OR1D2	P34982	312 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	ATP5C1	P36542	298 aa	Known RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	PBX3	P40426	434 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	LIMK2	P53671	638 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	CDH4	P55283	916 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	SESN2	P58004	480 aa	Predicted RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	PLD1	Q13393	1074 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	RFTN1	Q14699	578 aa	Predicted RBP	5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	LRRC26	Q2I0M4	334 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	GALNTL6	Q49A17	601 aa		5.6	□□□□□ -1.51
ATG4A-208	ENST00000489247	ALF	Q53S48	1182 aa		5.6	□□□□□ -1.51

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