RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 RAI2Q9Y5P3 530 aa23.03■■□□□ 1.28
COL9A3-213ENST00000489045 KIF26BQ2KJY2 2108 aa23.03■■□□□ 1.28
COL9A3-213ENST00000489045 CASC3O15234 703 aaKnown RBP23.02■■□□□ 1.28
COL9A3-213ENST00000489045 CTPS1P17812 591 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 ACTN2P35609 894 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 ETV3P41162 512 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 ABCG1P45844 678 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 GABREP78334 506 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 GBE1Q04446 702 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 TBC1D25Q3MII6 688 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 RBM44Q6ZP01 1051 aaKnown RBP23.02■■□□□ 1.28
COL9A3-213ENST00000489045 USP45Q70EL2 814 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 HSD11B1LQ7Z5J1 315 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 TSPAN33Q86UF1 283 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP23.02■■□□□ 1.28
COL9A3-213ENST00000489045 LRRN4Q8WUT4 740 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 PIH1D2Q8WWB5 315 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 FGF11Q92914 225 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 DTD2Q96FN9 168 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 CRELD1Q96HD1 420 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 TSGA13Q96PP4 275 aa23.02■■□□□ 1.28
COL9A3-213ENST00000489045 ARHGEF17Q96PE2 2063 aaPredicted RBP23.01■■□□□ 1.27
COL9A3-213ENST00000489045 PSMD11O00231 422 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 TNFRSF10CO14798 259 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 FZD6O60353 706 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 PDHA1P08559 390 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 CCNCP24863 283 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 ITPKBP27987 946 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 DSC2Q02487 901 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 ARHGEF7Q14155 803 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 ALG1LQ6GMV1 187 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 CBARPQ8N350 705 aaPredicted RBP23.01■■□□□ 1.27
COL9A3-213ENST00000489045 SLC35G2Q8TBE7 412 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 RAPGEF5Q92565 580 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 FATE1Q969F0 183 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 SYNDIG1Q9H7V2 258 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 NHEJ1Q9H9Q4 299 aaPredicted RBP23.01■■□□□ 1.27
COL9A3-213ENST00000489045 CYP4F12Q9HCS2 524 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 RBM22Q9NW64 420 aaKnown RBP eCLIP23.01■■□□□ 1.272e-6■■■■□ 23.8
COL9A3-213ENST00000489045 KCTD5Q9NXV2 234 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 MOSPD1Q9UJG1 213 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 PPIL1Q9Y3C6 166 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 TTLL3Q9Y4R7 772 aa23.01■■□□□ 1.27
COL9A3-213ENST00000489045 A0A0U1RQS6 177 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 RRP8O43159 456 aaKnown RBP23■■□□□ 1.27
COL9A3-213ENST00000489045 TCEA3O75764 348 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 MYCLP1P12525 358 aaPredicted RBP23■■□□□ 1.27
COL9A3-213ENST00000489045 KDELR1P24390 212 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 IHHQ14623 411 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 LRRC69Q6ZNQ3 347 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 TAF8Q7Z7C8 310 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 HEATR4Q86WZ0 1026 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 WDR48Q8TAF3 677 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 CCDC74AQ96AQ1 378 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 CCDC42Q96M95 316 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 SMIM14Q96QK8 99 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 TMEM168Q9H0V1 697 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 POLR1BQ9H9Y6 1135 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 PHPT1Q9NRX4 125 aaPredicted RBP23■■□□□ 1.27
COL9A3-213ENST00000489045 AMACRQ9UHK6 382 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 RABGEF1Q9UJ41 708 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 ENTPD2Q9Y5L3 495 aa23■■□□□ 1.27
COL9A3-213ENST00000489045 PRSS38A1L453 326 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 GOLGA6CA6NDK9 693 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 GOLGA6BA6NDN3 693 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 PDE2AO00408 941 aaPredicted RBP22.99■■□□□ 1.27
COL9A3-213ENST00000489045 HLA-DQB2P05538 268 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 GOLGA6DP0CG33 693 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 CCNB1P14635 433 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 MX2P20592 715 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 LSSP48449 732 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 SLC10A2Q12908 348 aaPredicted RBP22.99■■□□□ 1.27
COL9A3-213ENST00000489045 C3orf38Q5JPI3 329 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 Q6ZVL8 140 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 NDUFAF2Q8N183 169 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 HDAC11Q96DB2 347 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 ATXN7L3BQ96GX2 97 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 RNF157Q96PX1 679 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 TEX101Q9BY14 249 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 HAUS2Q9NVX0 235 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 GOLGA6AQ9NYA3 693 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 DTLQ9NZJ0 730 aa22.99■■□□□ 1.27
COL9A3-213ENST00000489045 LRRD1A4D1F6 860 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 KRT10P13645 584 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 HOXB3P14651 431 aaPredicted RBP22.98■■□□□ 1.27
COL9A3-213ENST00000489045 EPHB1P54762 984 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 SPIDRQ14159 915 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 LRRC66Q68CR7 880 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 RAET1GQ6H3X3 334 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 RHOT2Q8IXI1 618 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 LSMEM2Q8N112 164 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 CCNYQ8ND76 341 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 FAM46DQ8NEK8 389 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 GPR156Q8NFN8 814 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 CCL4L1Q8NHW4 92 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 ARRDC2Q8TBH0 407 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 GRAMD1AQ96CP6 724 aa22.98■■□□□ 1.27
COL9A3-213ENST00000489045 ZNF578Q96N58 590 aaPredicted RBP22.98■■□□□ 1.27
COL9A3-213ENST00000489045 TDRD1Q9BXT4 1180 aaKnown RBP22.98■■□□□ 1.27
COL9A3-213ENST00000489045 SUDS3Q9H7L9 328 aaPredicted RBP22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms