RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 CARS2Q9HA77 564 aaKnown RBP15.37■□□□□ 0.05
MCF2L-228ENST00000487354 ZNF71Q9NQZ8 489 aaPredicted RBP15.37■□□□□ 0.05
MCF2L-228ENST00000487354 PILRAQ9UKJ1 303 aa15.37■□□□□ 0.05
MCF2L-228ENST00000487354 IGHV1OR21-1A0A087WYE8 117 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 RHPN2P1A8MT19 583 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 ZNF891A8MT65 544 aaPredicted RBP15.36■□□□□ 0.05
MCF2L-228ENST00000487354 CCP110O43303 1012 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 UNGP13051 313 aaPredicted RBP15.36■□□□□ 0.05
MCF2L-228ENST00000487354 KELP23276 732 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 OAS2P29728 719 aaKnown RBP15.36■□□□□ 0.05
MCF2L-228ENST00000487354 GPR3P46089 330 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 CSNK1DP48730 415 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 CDR2Q01850 454 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 HIST2H2BCQ6DN03 193 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 WDR59Q6PJI9 974 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 SRLQ86TD4 932 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 FAM26EQ8N5C1 309 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 C9orf43Q8TAL5 461 aaPredicted RBP15.36■□□□□ 0.05
MCF2L-228ENST00000487354 MIB2Q96AX9 1013 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 TEX101Q9BY14 249 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 GANQ9H2C0 597 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 AKAP7Q9P0M2 348 aaPredicted RBP15.36■□□□□ 0.05
MCF2L-228ENST00000487354 KIAA1468Q9P260 1216 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 PDP2Q9P2J9 529 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 FZD10Q9ULW2 581 aa15.36■□□□□ 0.05
MCF2L-228ENST00000487354 LOC101059948A0A1B0GTJ6 334 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 A8MX80 341 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 B4E171 279 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 CREB3O43889 395 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 GPD1P21695 349 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 TSPAN7P41732 249 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 CD97P48960 835 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 CDC20Q12834 499 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 TSR1Q2NL82 804 aaKnown RBP15.35■□□□□ 0.05
MCF2L-228ENST00000487354 ANKS6Q68DC2 871 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 TIPARPQ7Z3E1 657 aaKnown RBP15.35■□□□□ 0.05
MCF2L-228ENST00000487354 HEATR4Q86WZ0 1026 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 ZNF677Q86XU0 584 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 AGBL5Q8NDL9 886 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 RTP4Q96DX8 246 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 CELF6Q96J87 481 aaKnown RBP15.35■□□□□ 0.05
MCF2L-228ENST00000487354 CATSPER2Q96P56 530 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 TUBGCP2Q9BSJ2 902 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 GSDMCQ9BYG8 508 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 STK33Q9BYT3 514 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 ATP13A3Q9H7F0 1226 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 SUDS3Q9H7L9 328 aaPredicted RBP15.35■□□□□ 0.05
MCF2L-228ENST00000487354 TRNAU1APQ9NX07 287 aaKnown RBP15.35■□□□□ 0.05
MCF2L-228ENST00000487354 SLC39A1Q9NY26 324 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 B4GALT6Q9UBX8 382 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 MOSPD1Q9UJG1 213 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 SUFUQ9UMX1 484 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 PLEKHM1Q9Y4G2 1056 aa15.35■□□□□ 0.05
MCF2L-228ENST00000487354 ITPR2Q14571 2701 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 BLACEA4D250 179 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 TEX33O43247 280 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 PRKAR1AP10644 381 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 KRT3P12035 628 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 SERPINA4P29622 427 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 GNPDA1P46926 289 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 JAM2P57087 298 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 CTBSQ01459 385 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 CNGA3Q16281 694 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 HSP90AA4PQ58FG1 418 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 CFAP58Q5T655 872 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 ATP1A1-AS1Q5TC04 95 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 SLC30A9Q6PML9 568 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 ARHGAP36Q6ZRI8 547 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 ARHGAP12Q8IWW6 846 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 CBARPQ8N350 705 aaPredicted RBP15.34■□□□□ 0.05
MCF2L-228ENST00000487354 SPOCK2Q92563 424 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 ABHD17AQ96GS6 310 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 SLC39A8Q9C0K1 460 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 SHANK1Q9Y566 2161 aa15.34■□□□□ 0.05
MCF2L-228ENST00000487354 TNRC6AQ8NDV7 1962 aaKnown RBP15.33■□□□□ 0.05
MCF2L-228ENST00000487354 EFCAB7A8K855 629 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 K7EM74 188 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 EPHB6O15197 1021 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 FGF10O15520 208 aaPredicted RBP15.33■□□□□ 0.04
MCF2L-228ENST00000487354 GFPT2O94808 682 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 SOD1P00441 154 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 PRKCSHP14314 528 aaPredicted RBP15.33■□□□□ 0.04
MCF2L-228ENST00000487354 LHCGRP22888 699 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 POLD2P49005 469 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 KLK7P49862 253 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 PAPOLAP51003 745 aaKnown RBP15.33■□□□□ 0.04
MCF2L-228ENST00000487354 CDK3Q00526 305 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 ILF3Q12906 894 aaKnown RBP eCLIP15.33■□□□□ 0.04
MCF2L-228ENST00000487354 NCAPHQ15003 741 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 ACOX1Q15067 660 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 PPP1R15BQ5SWA1 713 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 ZNF761Q86XN6 746 aaPredicted RBP15.33■□□□□ 0.04
MCF2L-228ENST00000487354 UNC5BQ8IZJ1 945 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 NPWQ8N729 165 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 C3orf20Q8ND61 904 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 NUS1Q96E22 293 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 SCARF2Q96GP6 870 aaPredicted RBP15.33■□□□□ 0.04
MCF2L-228ENST00000487354 CATSPERBQ9H7T0 1116 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 SLC17A4Q9Y2C5 497 aa15.33■□□□□ 0.04
MCF2L-228ENST00000487354 TTC24A2A3L6 582 aaPredicted RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms