RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 IZUMO1Q8IYV9 350 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 PHF10Q8WUB8 498 aaKnown RBP16.46■□□□□ 0.23
COL7A1-210ENST00000487017 TM6SF2Q9BZW4 377 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 MDM4O15151 490 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 SLC26A3P40879 764 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 DLG2Q15700 870 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 FNDC3BQ53EP0 1204 aaKnown RBP16.46■□□□□ 0.23
COL7A1-210ENST00000487017 XKR6Q5GH73 641 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 FBXL19Q6PCT2 694 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 DCLRE1AQ6PJP8 1040 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 SLC26A9Q7LBE3 791 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 OR2T34Q8NGX1 318 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 OR2T3Q8NH03 318 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 FAM81AQ8TBF8 368 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 PTCD2Q8WV60 388 aaKnown RBP16.46■□□□□ 0.23
COL7A1-210ENST00000487017 GNEQ9Y223 722 aaKnown RBP16.46■□□□□ 0.23
COL7A1-210ENST00000487017 NR2E1Q9Y466 385 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 COL1A2P08123 1366 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 ENO2P09104 434 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-210ENST00000487017 PPM1JQ5JR12 505 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 GRIN3AQ8TCU5 1115 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 SPACA7Q96KW9 195 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 ADI1Q9BV57 179 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 THG1LQ9NWX6 298 aaKnown RBP16.46■□□□□ 0.23
COL7A1-210ENST00000487017 UBAP1Q9NZ09 502 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 FADS3Q9Y5Q0 445 aa16.46■□□□□ 0.23
COL7A1-210ENST00000487017 PQBP1O60828 265 aaKnown RBP16.46■□□□□ 0.22
COL7A1-210ENST00000487017 WARSP23381 471 aaKnown RBP16.46■□□□□ 0.22
COL7A1-210ENST00000487017 MAP1SQ66K74 1059 aaPredicted RBP16.46■□□□□ 0.22
COL7A1-210ENST00000487017 LRP10Q7Z4F1 713 aa16.46■□□□□ 0.22
COL7A1-210ENST00000487017 ARMC8Q8IUR7 673 aa16.46■□□□□ 0.22
COL7A1-210ENST00000487017 NXF3Q9H4D5 531 aaKnown RBP16.46■□□□□ 0.22
COL7A1-210ENST00000487017 SIX2Q9NPC8 291 aa16.46■□□□□ 0.22
COL7A1-210ENST00000487017 STXBP5LQ9Y2K9 1186 aa16.46■□□□□ 0.22
COL7A1-210ENST00000487017 LYNP07948 512 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 SMIM11AP58511 58 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 CYP1B1Q16678 543 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 PPM1LQ5SGD2 360 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 DRICH1Q6PGQ1 229 aaPredicted RBP16.45■□□□□ 0.22
COL7A1-210ENST00000487017 OR2T12Q8NG77 320 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 CAPSLQ8WWF8 208 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 BORCS5Q969J3 196 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 EXOC2Q96KP1 924 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 KLHL5Q96PQ7 755 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 SLC39A8Q9C0K1 460 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 MRPL17Q9NRX2 175 aaKnown RBP16.45■□□□□ 0.22
COL7A1-210ENST00000487017 C3P01024 1663 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 C5orf60A6NFR6 353 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 TAF4O00268 1085 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 GCATO75600 419 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 FTH1P02794 183 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 LIMK2P53671 638 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 BLMHQ13867 455 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 CPSF6Q16630 551 aaKnown RBP eCLIP16.45■□□□□ 0.22
COL7A1-210ENST00000487017 CPSF7Q8N684 471 aaKnown RBP16.45■□□□□ 0.22
COL7A1-210ENST00000487017 CNTD1Q8N815 330 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 RNASE11Q8TAA1 199 aaKnown RBP16.45■□□□□ 0.22
COL7A1-210ENST00000487017 NXNL1Q96CM4 212 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 SPATA5L1Q9BVQ7 753 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 GBA3Q9H227 469 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 ZNHIT2Q9UHR6 403 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 QSOX1O00391 747 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 OR6B1O95007 311 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 AP2A1O95782 977 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 CD48P09326 243 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 SPIBQ01892 262 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 SEMA5AQ13591 1074 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 CXCL17Q6UXB2 119 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 ZNF671Q8TAW3 534 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 GIPC3Q8TF64 312 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 MTPAPQ9NVV4 582 aaKnown RBP eCLIP16.45■□□□□ 0.22
COL7A1-210ENST00000487017 FBXO10Q9UK96 956 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 LYVE1Q9Y5Y7 322 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 IGLV3-22A0A075B6J6 115 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 A0A088AWK7 358 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 ZNF10P21506 573 aaPredicted RBP16.45■□□□□ 0.22
COL7A1-210ENST00000487017 SP100P23497 879 aaPredicted RBP16.45■□□□□ 0.22
COL7A1-210ENST00000487017 CCR4P51679 360 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 RALGDSQ12967 914 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 OTOP3Q7RTS5 596 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 SPPL2CQ8IUH8 684 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 RBFAQ8N0V3 343 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 ZFP28Q8NHY6 868 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 GPR20Q99678 358 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 CIB1Q99828 191 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 ST3GAL5Q9UNP4 418 aa16.45■□□□□ 0.22
COL7A1-210ENST00000487017 TM4SF1P30408 202 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 PRKAG1P54619 331 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 NOMO2Q5JPE7 1267 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 VWA5B1Q5TIE3 1220 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 METTL3Q86U44 580 aaKnown RBP16.44■□□□□ 0.22
COL7A1-210ENST00000487017 CADM1Q9BY67 442 aaKnown RBP16.44■□□□□ 0.22
COL7A1-210ENST00000487017 CHRAC1Q9NRG0 131 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 MAP10Q9P2G4 905 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.44■□□□□ 0.22
COL7A1-210ENST00000487017 NPEPPSL1A6NEC2 478 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 DHX15O43143 795 aaKnown RBP16.44■□□□□ 0.22
COL7A1-210ENST00000487017 LIN52Q52LA3 116 aa16.44■□□□□ 0.22
COL7A1-210ENST00000487017 WDR12Q9GZL7 423 aaKnown RBP16.44■□□□□ 0.22
COL7A1-210ENST00000487017 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.44■□□□□ 0.221e-6■■■■□ 21.8
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms