RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-205ENST00000486941 MTMR9Q96QG7 549 aa4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 PAAF1Q9BRP4 392 aa4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 DPCDQ9BVM2 203 aaPredicted RBP4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 TRIM54Q9BYV2 358 aa4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 POLR3FQ9H1D9 316 aaPredicted RBP4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 C2orf40Q9H1Z8 148 aa4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 SARS2Q9NP81 518 aaKnown RBP4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 GJB4Q9NTQ9 266 aa4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 GDE1Q9NZC3 331 aa4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 ORC3Q9UBD5 711 aaPredicted RBP4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 HEY2Q9UBP5 337 aa4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 AMFRQ9UKV5 643 aa4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 MYH11P35749 1972 aa4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 DMXL1Q9Y485 3027 aa4.3□□□□□ -1.72
SNRNP40-205ENST00000486941 MAP1BP46821 2468 aaKnown RBP4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 IGKV2D-30A0A075B6S6 120 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 A0A087WWV3 80 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 MED19A0JLT2 244 aaPredicted RBP4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 CASTOR2A6NHX0 329 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 LRRIQ4A6NIV6 560 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 PTGESO14684 152 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 DSCR3O14972 297 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 CCL16O15467 120 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 ADAM12O43184 909 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 SPRY2O43597 315 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 TRAPPC3O43617 180 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 TBC1D4O60343 1298 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 USO1O60763 962 aaKnown RBP4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 ECI2O75521 394 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 CTDNEP1O95476 244 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 MT-CO3P00414 261 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 FDPSP14324 419 aaKnown RBP4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 PTPN2P17706 415 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 CYP11B2P19099 503 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 OR1D2P34982 312 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 RPS9P46781 194 aaKnown RBP4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 THBS3P49746 956 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 DIO1P49895 249 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 NTHL1P78549 312 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 CFHR1Q03591 330 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 CSTF1Q05048 431 aaKnown RBP4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 PRPF4BQ13523 1007 aaKnown RBP4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 PPP2R5AQ15172 486 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 ANKRD1Q15327 319 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 MAPK6Q16659 721 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 MIDNQ504T8 468 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 CCDC157Q569K6 752 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 ZNF852Q6ZMS4 543 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 CATSPER3Q86XQ3 398 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 SFTPA1Q8IWL2 248 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 ZBTB8OSQ8IWT0 167 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 DCLK2Q8N568 766 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 ZBTB44Q8NCP5 570 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 ZNF461Q8TAF7 563 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 PPP1R35Q8TAP8 253 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 ITFG1Q8TB96 612 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 WDYHV1Q96HA8 205 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 MARK4Q96L34 752 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 ADPGKQ9BRR6 497 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 POLR3CQ9BUI4 534 aaPredicted RBP4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 DPH1Q9BZG8 443 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 FOXP1Q9H334 677 aaPredicted RBP4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 PDZD7Q9H5P4 517 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 TUFT1Q9NNX1 390 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 LTB4R2Q9NPC1 389 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 ZSCAN32Q9NX65 697 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 DNMT3BQ9UBC3 853 aaKnown RBP4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 MTRRQ9UBK8 725 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 CACNG4Q9UBN1 327 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 TPCN1Q9ULQ1 816 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 MTF2Q9Y483 593 aaPredicted RBP4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 CHD8Q9HCK8 2581 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 FRYLO94915 3013 aa4.29□□□□□ -1.72
SNRNP40-205ENST00000486941 PDCD11Q14690 1871 aaKnown RBP4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 ATG2BQ96BY7 2078 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 KMT2BQ9UMN6 2715 aaPredicted RBP4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 SMIM28A0A1B0GU29 152 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 ARHGEF37A1IGU5 675 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 MYMKA6NI61 221 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 CD8B2A6NJW9 211 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 BTBD18B2RXH4 712 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 ZNF197O14709 1029 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 NEMFO60524 1076 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 MED24O75448 989 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 B3GAT3O94766 335 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 FGF2P09038 288 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 CD72P21854 359 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 MUTP22033 750 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 RPA1P27694 616 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 NAMPTP43490 491 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 CLCNKBP51801 687 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 EFNA5P52803 228 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 COPB1P53618 953 aaKnown RBP4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 ANAPC15P60006 121 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 ARHGAP8P85298 464 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 ORC2Q13416 577 aaPredicted RBP4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 TWIST1Q15672 202 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 UPP1Q16831 310 aa4.28□□□□□ -1.72
SNRNP40-205ENST00000486941 DCAF4L1Q3SXM0 396 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms