RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 GIPC3Q8TF64 312 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 ACSS2Q9NR19 701 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 PACSIN3Q9UKS6 424 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 GLI3P10071 1580 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 ATP6AP2A0A1C7CYW4 349 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CCL16O15467 120 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 DYRK3O43781 588 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 ACSL4O60488 711 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 ATP6AP2O75787 350 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 ZNF23P17027 643 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 MAPK1P28482 360 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 GRIA1P42261 906 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CLK1P49759 484 aaKnown RBP11.04□□□□□ -0.64
HDAC6-228ENST00000486227 MTTPP55157 894 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 TGM3Q08188 693 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 SPRED3Q2MJR0 410 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 DNAJC14Q6Y2X3 702 aaPredicted RBP11.04□□□□□ -0.64
HDAC6-228ENST00000486227 LDB1Q86U70 411 aaPredicted RBP11.04□□□□□ -0.64
HDAC6-228ENST00000486227 RTL3Q8N8U3 475 aaKnown RBP11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CD101Q93033 1021 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 HMCESQ96FZ2 354 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 FAM126AQ9BYI3 521 aaPredicted RBP11.04□□□□□ -0.64
HDAC6-228ENST00000486227 OPTCQ9UBM4 332 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 IRAK2O43187 625 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 ATP6V1G1O75348 118 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 SH3BGRLO75368 114 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 SEC22BO75396 215 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CPSF4O95639 269 aaKnown RBP11.04□□□□□ -0.64
HDAC6-228ENST00000486227 RPN2P04844 631 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CRHR1P34998 444 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 PRIM2P49643 509 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 HPCAP84074 193 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CHRNB3Q05901 458 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 RGS21Q2M5E4 152 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 LIPMQ5VYY2 423 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 DOK6Q6PKX4 331 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 FAM43BQ6ZT52 329 aaPredicted RBP11.04□□□□□ -0.64
HDAC6-228ENST00000486227 PCDH20Q8N6Y1 951 aaKnown RBP11.04□□□□□ -0.64
HDAC6-228ENST00000486227 NAT8LQ8N9F0 302 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 OR4K2Q8NGD2 314 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CLPTM1LQ96KA5 538 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 TEKT5Q96M29 485 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 SLC39A8Q9C0K1 460 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 RAD18Q9NS91 495 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 PNPLA3Q9NST1 481 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 SCN3BQ9NY72 215 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 RAP2CQ9Y3L5 183 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CAPN8A6NHC0 703 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 PSMD12O00232 456 aaPredicted RBP11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CNMDO75829 334 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 NFATC1O95644 943 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 DGKAP23743 735 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 MAPK9P45984 424 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 TP53BP2Q13625 1128 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 NRF1Q16656 503 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CYP51A1Q16850 503 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 ESRP1Q6NXG1 681 aaKnown RBP11.04□□□□□ -0.64
HDAC6-228ENST00000486227 IL27RAQ6UWB1 636 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 MAMDC4Q6UXC1 1216 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 DET1Q7L5Y6 550 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CPA6Q8N4T0 437 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 PSMG2Q969U7 264 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 FUBP3Q96I24 572 aaKnown RBP eCLIP11.04□□□□□ -0.64
HDAC6-228ENST00000486227 ASB2Q96Q27 587 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 SLC25A51Q9H1U9 297 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 RMND5AQ9H871 391 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 TMEM165Q9HC07 324 aa11.04□□□□□ -0.64
HDAC6-228ENST00000486227 CCDC159P0C7I6 412 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 PTPN2P17706 415 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 ECHS1P30084 290 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 MC4RP32245 332 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 SCNN1AP37088 669 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 KRR1Q13601 381 aaKnown RBP11.03□□□□□ -0.64
HDAC6-228ENST00000486227 ARMC3Q5W041 872 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 SCIMPQ6UWF3 145 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 CYP2R1Q6VVX0 501 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 DHFR2Q86XF0 187 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 SLC44A2Q8IWA5 706 aaPredicted RBP11.03□□□□□ -0.64
HDAC6-228ENST00000486227 FAM126BQ8IXS8 530 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 AZIN2Q96A70 460 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 PIWIL1Q96J94 861 aaKnown RBP11.03□□□□□ -0.64
HDAC6-228ENST00000486227 SUSD3Q96L08 255 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 TBATAQ96M53 351 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 C1orf50Q9BV19 199 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 OSBPL11Q9BXB4 747 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 UNC93B1Q9H1C4 597 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 MIR1-1HGQ9H1L0 117 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 ZC4H2Q9NQZ6 224 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 RAB26Q9ULW5 256 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 HBS1LQ9Y450 684 aaKnown RBP11.03□□□□□ -0.64
HDAC6-228ENST00000486227 USP54Q70EL1 1684 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 ZBTB14O43829 449 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 ACTR3P61158 418 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 DAB2P98082 770 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 MPP1Q00013 466 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 GNA12Q03113 381 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 GRM3Q14832 879 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 TRIP4Q15650 581 aaPredicted RBP11.03□□□□□ -0.64
HDAC6-228ENST00000486227 RAB30Q15771 203 aa11.03□□□□□ -0.64
HDAC6-228ENST00000486227 INAQ16352 499 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms