RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 RAB6BQ9NRW1 208 aa8.29□□□□□ -1.08
SF3A1-208ENST00000485618 PKD2L2Q9NZM6 624 aa8.29□□□□□ -1.08
SF3A1-208ENST00000485618 B4GALT6Q9UBX8 382 aa8.29□□□□□ -1.08
SF3A1-208ENST00000485618 EIF2B4Q9UI10 523 aaKnown RBP8.29□□□□□ -1.08
SF3A1-208ENST00000485618 PKP3Q9Y446 797 aa8.29□□□□□ -1.08
SF3A1-208ENST00000485618 THADAQ6YHU6 1953 aa8.29□□□□□ -1.08
SF3A1-208ENST00000485618 USP24Q9UPU5 2620 aa8.29□□□□□ -1.08
SF3A1-208ENST00000485618 RALGAPA1Q6GYQ0 2036 aa8.29□□□□□ -1.08
SF3A1-208ENST00000485618 C1orf232A0A0U1RR37 186 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 A6NNZ2 444 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 SMAPO00193 183 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 VILLO15195 856 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 ZNF185O15231 689 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 YKT6O15498 198 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 HEXIM1O94992 359 aaKnown RBP8.28□□□□□ -1.08
SF3A1-208ENST00000485618 AP2A1O95782 977 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 KRT14P02533 472 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 APRTP07741 180 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 PDHA1P08559 390 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 C6P13671 934 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 CTPS1P17812 591 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 PSMB4P28070 264 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 CD38P28907 300 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 CD68P34810 354 aaPredicted RBP8.28□□□□□ -1.08
SF3A1-208ENST00000485618 HNF1BP35680 557 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 ABL2P42684 1182 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 ARRB1P49407 418 aaPredicted RBP8.28□□□□□ -1.08
SF3A1-208ENST00000485618 METAP1P53582 386 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 SHC2P98077 582 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 DR1Q01658 176 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 DHX34Q14147 1143 aaKnown RBP8.28□□□□□ -1.08
SF3A1-208ENST00000485618 AGERQ15109 404 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 SIX1Q15475 284 aaPredicted RBP8.28□□□□□ -1.08
SF3A1-208ENST00000485618 SLC1A5Q15758 541 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 QPCTQ16769 361 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 TMEM259Q4ZIN3 620 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 TRIM61Q5EBN2 209 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 SIRPB2Q5JXA9 342 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 TCEAL6Q6IPX3 200 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 PSAPL1Q6NUJ1 521 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 KDELC1Q6UW63 502 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 RANBP10Q6VN20 620 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 NLRP9Q7RTR0 991 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 NLRP8Q86W28 1048 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 SLC41A1Q8IVJ1 513 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 C17orf53Q8N3J3 647 aaPredicted RBP8.28□□□□□ -1.08
SF3A1-208ENST00000485618 BBOF1Q8ND07 529 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 TCEAL3Q969E4 200 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 C19orf43Q9BQ61 176 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 TBL1YQ9BQ87 522 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 FRMD8Q9BZ67 464 aaPredicted RBP8.28□□□□□ -1.08
SF3A1-208ENST00000485618 C10orf88Q9H8K7 445 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 EIF2B3Q9NR50 452 aaKnown RBP8.28□□□□□ -1.08
SF3A1-208ENST00000485618 UBP1Q9NZI7 540 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 PCYOX1Q9UHG3 505 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 CDC23Q9UJX2 597 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 PLXND1Q9Y4D7 1925 aa8.28□□□□□ -1.08
SF3A1-208ENST00000485618 ANKRD11Q6UB99 2663 aaPredicted RBP8.27□□□□□ -1.08
SF3A1-208ENST00000485618 SETXQ7Z333 2677 aaKnown RBP8.27□□□□□ -1.08
SF3A1-208ENST00000485618 TRPM6Q9BX84 2022 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.27□□□□□ -1.09
SF3A1-208ENST00000485618 A8MX80 341 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 TLR4O00206 839 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 CACNB4O00305 520 aaPredicted RBP8.27□□□□□ -1.09
SF3A1-208ENST00000485618 TM4SF5O14894 197 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 STX7O15400 261 aaKnown RBP8.27□□□□□ -1.09
SF3A1-208ENST00000485618 GJB3O75712 270 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 RECQL5O94762 991 aaPredicted RBP8.27□□□□□ -1.09
SF3A1-208ENST00000485618 KCNK5O95279 499 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 CER1O95813 267 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 PRLP01236 227 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 TSHRP16473 764 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 MAOBP27338 520 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 RPL22P35268 128 aaKnown RBP8.27□□□□□ -1.09
SF3A1-208ENST00000485618 KCNJ1P48048 391 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 NPY2RP49146 381 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 BLKP51451 505 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 NOVA1P51513 510 aaKnown RBP8.27□□□□□ -1.09
SF3A1-208ENST00000485618 THOP1P52888 689 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 BASP1P80723 227 aaKnown RBP8.27□□□□□ -1.09
SF3A1-208ENST00000485618 DPTQ07507 201 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 CDH17Q12864 832 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 GPS1Q13098 491 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 SEMA5AQ13591 1074 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 PEX6Q13608 980 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 GALNT3Q14435 633 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 SUZ12Q15022 739 aaKnown RBP8.27□□□□□ -1.09
SF3A1-208ENST00000485618 INAVAQ3KP66 663 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 DNTTIP2Q5QJE6 756 aaKnown RBP8.27□□□□□ -1.09
SF3A1-208ENST00000485618 PLA2G2CQ5R387 149 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 PEAR1Q5VY43 1037 aaPredicted RBP8.27□□□□□ -1.09
SF3A1-208ENST00000485618 SEL1L3Q68CR1 1132 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 LRRC66Q68CR7 880 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 DENND2CQ68D51 928 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 SLC23A3Q6PIS1 610 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 CRTC1Q6UUV9 634 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 LIPIQ6XZB0 460 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 ZNF765Q7L2R6 523 aa8.27□□□□□ -1.09
SF3A1-208ENST00000485618 ZCCHC9Q8N567 271 aaKnown RBP8.27□□□□□ -1.09
SF3A1-208ENST00000485618 SLC25A41Q8N5S1 370 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms