RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 GSRP00390 522 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 TRIM49P0CI25 452 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 TRIM49CP0CI26 452 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 SLC2A4P14672 509 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 DNAJA1P31689 397 aaKnown RBP8.03□□□□□ -1.12
USP54-211ENST00000474929 ARCN1P48444 511 aaKnown RBP8.03□□□□□ -1.12
USP54-211ENST00000474929 MEOX1P50221 254 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 RBPJQ06330 500 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 MYBPC3Q14896 1274 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 PCOLCEQ15113 449 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 STILQ15468 1287 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 TMEM52BQ4KMG9 183 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 ZC3H12AQ5D1E8 599 aaKnown RBP8.03□□□□□ -1.12
USP54-211ENST00000474929 IZUMO3Q5VZ72 239 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 HGSNATQ68CP4 663 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 ANKRD40Q6AI12 368 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 ERAP2Q6P179 960 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 GUF1Q8N442 669 aaKnown RBP8.03□□□□□ -1.12
USP54-211ENST00000474929 RYBPQ8N488 228 aaPredicted RBP8.03□□□□□ -1.12
USP54-211ENST00000474929 OR2AP1Q8NGE2 309 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 DNAJB8Q8NHS0 232 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 ADAMTS17Q8TE56 1095 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 GRHL3Q8TE85 626 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 NCSTNQ92542 709 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 C18orf12Q96KH6 178 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 HSFY1Q96LI6 401 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 FER1L6-AS2Q96M78 137 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 ALPK1Q96QP1 1244 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 OR6C1Q96RD1 312 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 PSMB7Q99436 277 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 WRAP53Q9BUR4 548 aaKnown RBP8.03□□□□□ -1.12
USP54-211ENST00000474929 CISHQ9NSE2 258 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 OLAHQ9NV23 265 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 KIAA1257Q9ULG3 409 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 MYO7BQ6PIF6 2116 aa8.03□□□□□ -1.12
USP54-211ENST00000474929 TRGV8A0A0C4DH27 118 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 CFAP69A5D8W1 941 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 DRGXA6NNA5 263 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 RNF103O00237 685 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 TULP2O00295 520 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 CCL21O00585 134 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 ADCY5O95622 1261 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 UGT2B4P06133 528 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 MYCLP1P12525 358 aaPredicted RBP8.02□□□□□ -1.13
USP54-211ENST00000474929 STAT6P42226 847 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 IST1P53990 364 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 RAD23BP54727 409 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 HHEXQ03014 270 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 INAQ16352 499 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 C5orf22Q49AR2 442 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 FAM26FQ5R3K3 315 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 SLC30A9Q6PML9 568 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 CLEC9AQ6UXN8 241 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 EPM2AIP1Q7L775 607 aaPredicted RBP8.02□□□□□ -1.13
USP54-211ENST00000474929 CUZD1Q86UP6 607 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 TMEM200AQ86VY9 491 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 OR52K2Q8NGK3 314 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 CCL4L1Q8NHW4 92 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 HCAR2Q8TDS4 363 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 TMEM174Q8WUU8 243 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 INPP5DQ92835 1189 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 FUBP1Q96AE4 644 aaKnown RBP8.02□□□□□ -1.13
USP54-211ENST00000474929 ARSGQ96EG1 525 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 KLHL32Q96NJ5 620 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 ENKD1Q9H0I2 346 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 POPDC2Q9HBU9 364 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 SARS2Q9NP81 518 aaKnown RBP8.02□□□□□ -1.13
USP54-211ENST00000474929 PHPT1Q9NRX4 125 aaPredicted RBP8.02□□□□□ -1.13
USP54-211ENST00000474929 TMEM51Q9NW97 253 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 KCTD5Q9NXV2 234 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 VANGL2Q9ULK5 521 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 NOVA2Q9UNW9 492 aaKnown RBP8.02□□□□□ -1.13
USP54-211ENST00000474929 PLEKHM1Q9Y4G2 1056 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 HS3ST4Q9Y661 456 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 CACNA1CQ13936 2221 aa8.02□□□□□ -1.13
USP54-211ENST00000474929 A0A0U1RQS6 177 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 ILVBLA1L0T0 632 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 KRIT1O00522 736 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 CPNE3O75131 537 aaKnown RBP8.01□□□□□ -1.13
USP54-211ENST00000474929 ENDOD1O94919 500 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 TRUB2O95900 331 aaKnown RBP8.01□□□□□ -1.13
USP54-211ENST00000474929 IGLV3-25P01717 112 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 RAB40ALP0C0E4 278 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 VDRP11473 427 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 TRIM23P36406 574 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 ACTR1BP42025 376 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 CA7P43166 264 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 GSDMDP57764 484 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 ACTR1AP61163 376 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 RPS18P62269 152 aaKnown RBP8.01□□□□□ -1.13
USP54-211ENST00000474929 PPP2R2BQ00005 443 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 AMPD3Q01432 767 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 ENPEPQ07075 957 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 CDC16Q13042 620 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 LAMB3Q13751 1172 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 AUHQ13825 339 aaKnown RBP8.01□□□□□ -1.13
USP54-211ENST00000474929 LRP8Q14114 963 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 GRM3Q14832 879 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 LLGL1Q15334 1064 aa8.01□□□□□ -1.13
USP54-211ENST00000474929 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms