RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 DENND2CQ68D51 928 aa19.78■□□□□ 0.76
COL9A3-210ENST00000472880 SPECC1LQ69YQ0 1117 aa19.78■□□□□ 0.76
COL9A3-210ENST00000472880 OGFOD3Q6PK18 319 aa19.78■□□□□ 0.76
COL9A3-210ENST00000472880 PCSK4Q6UW60 755 aa19.78■□□□□ 0.76
COL9A3-210ENST00000472880 PGBD5Q8N414 524 aa19.78■□□□□ 0.76
COL9A3-210ENST00000472880 KIAA1524Q8TCG1 905 aa19.78■□□□□ 0.76
COL9A3-210ENST00000472880 TEKT4Q8WW24 435 aa19.78■□□□□ 0.76
COL9A3-210ENST00000472880 SUDS3Q9H7L9 328 aaPredicted RBP19.78■□□□□ 0.76
COL9A3-210ENST00000472880 NOD2Q9HC29 1040 aa19.78■□□□□ 0.76
COL9A3-210ENST00000472880 WDR70Q9NW82 654 aa19.78■□□□□ 0.76
COL9A3-210ENST00000472880 APPL1Q9UKG1 709 aa19.78■□□□□ 0.76
COL9A3-210ENST00000472880 PHTF1Q9UMS5 762 aa19.78■□□□□ 0.76
COL9A3-210ENST00000472880 KIF26BQ2KJY2 2108 aa19.78■□□□□ 0.76
COL9A3-210ENST00000472880 MAFKO60675 156 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 HEXIM1O94992 359 aaKnown RBP19.77■□□□□ 0.76
COL9A3-210ENST00000472880 JMJD7P0C870 316 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 RARAP10276 462 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 PNLIPP16233 465 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 MMP13P45452 471 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 CDH6P55285 790 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 MAXP61244 160 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 TRAF2Q12933 501 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 CLN3Q13286 438 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 ARHGEF7Q14155 803 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 ZSCAN23Q3MJ62 389 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 RALGPS1Q5JS13 557 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 SPRED1Q7Z699 444 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 HEATR4Q86WZ0 1026 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 PELI3Q8N2H9 469 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 ZNF843Q8N446 348 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 CCL4L1Q8NHW4 92 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 SNRNP27Q8WVK2 155 aaKnown RBP19.77■□□□□ 0.76
COL9A3-210ENST00000472880 DTD2Q96FN9 168 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 WBP1Q96G27 269 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 CARS2Q9HA77 564 aaKnown RBP19.77■□□□□ 0.76
COL9A3-210ENST00000472880 PCDH18Q9HCL0 1135 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 LRIT1Q9P2V4 623 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 IP6K2Q9UHH9 426 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 ANAPC7Q9UJX3 599 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 SSUH2Q9Y2M2 353 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 PCDHGA7Q9Y5G6 932 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 BZW2Q9Y6E2 419 aaKnown RBP19.77■□□□□ 0.76
COL9A3-210ENST00000472880 RNF215Q9Y6U7 377 aa19.77■□□□□ 0.76
COL9A3-210ENST00000472880 GOLGA6CA6NDK9 693 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 GOLGA6BA6NDN3 693 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 CAPN8A6NHC0 703 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 GOLGA6DP0CG33 693 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 TPM4P67936 248 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 HLTFQ14527 1009 aaKnown RBP eCLIP19.76■□□□□ 0.75
COL9A3-210ENST00000472880 KRT81Q14533 505 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 NR1I3Q14994 352 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 MARC1Q5VT66 337 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 CCDC81Q6ZN84 652 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 USP45Q70EL2 814 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 SFTPA2Q8IWL1 248 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 NIPA2Q8N8Q9 360 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 THAP2Q9H0W7 228 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 GOLGA6AQ9NYA3 693 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 PISDQ9UG56 409 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 ATXN7L1Q9ULK2 861 aaPredicted RBP19.76■□□□□ 0.75
COL9A3-210ENST00000472880 LOXL2Q9Y4K0 774 aa19.76■□□□□ 0.75
COL9A3-210ENST00000472880 GCN1Q92616 2671 aaKnown RBP19.76■□□□□ 0.75
COL9A3-210ENST00000472880 NPIPB15A6NHN6 443 aaPredicted RBP19.75■□□□□ 0.75
COL9A3-210ENST00000472880 K7ENP7 123 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 PSMD11O00231 422 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 NUDT21O43809 227 aaKnown RBP19.75■□□□□ 0.75
COL9A3-210ENST00000472880 PGLSO95336 258 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 HGFP14210 728 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 CCNB1P14635 433 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 LHCGRP22888 699 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 SLC5A2P31639 672 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 ETV3P41162 512 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 SLC25A11Q02978 314 aaKnown RBP19.75■□□□□ 0.75
COL9A3-210ENST00000472880 ILF3Q12906 894 aaKnown RBP eCLIP19.75■□□□□ 0.75
COL9A3-210ENST00000472880 IQCB1Q15051 598 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 MAP9Q49MG5 647 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 ARMC12Q5T9G4 340 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 HGSNATQ68CP4 663 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 TXNRD3NBQ6F5E7 133 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 RAET1GQ6H3X3 334 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 INO80CQ6PI98 192 aaPredicted RBP19.75■□□□□ 0.75
COL9A3-210ENST00000472880 HSD11B1LQ7Z5J1 315 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 BTBD6Q96KE9 485 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 NUP85Q9BW27 656 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 TEX101Q9BY14 249 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 GSDMCQ9BYG8 508 aa19.75■□□□□ 0.75
COL9A3-210ENST00000472880 A0A1W2PQJ5 194 aa19.74■□□□□ 0.75
COL9A3-210ENST00000472880 KRT10P13645 584 aa19.74■□□□□ 0.75
COL9A3-210ENST00000472880 SSR1P43307 286 aaKnown RBP19.74■□□□□ 0.75
COL9A3-210ENST00000472880 CDK3Q00526 305 aa19.74■□□□□ 0.75
COL9A3-210ENST00000472880 ZNF605Q86T29 641 aa19.74■□□□□ 0.75
COL9A3-210ENST00000472880 GPBAR1Q8TDU6 330 aa19.74■□□□□ 0.75
COL9A3-210ENST00000472880 SYN2Q92777 582 aaPredicted RBP19.74■□□□□ 0.75
COL9A3-210ENST00000472880 TMEM159Q96B96 161 aa19.74■□□□□ 0.75
COL9A3-210ENST00000472880 SCRN2Q96FV2 425 aa19.74■□□□□ 0.75
COL9A3-210ENST00000472880 CCNL2Q96S94 520 aaPredicted RBP19.74■□□□□ 0.75
COL9A3-210ENST00000472880 FRMD8Q9BZ67 464 aaPredicted RBP19.74■□□□□ 0.75
COL9A3-210ENST00000472880 NT5MQ9NPB1 228 aa19.74■□□□□ 0.75
COL9A3-210ENST00000472880 RCOR3Q9P2K3 495 aaPredicted RBP19.74■□□□□ 0.75
COL9A3-210ENST00000472880 KALRNO60229 2985 aa19.73■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms