RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 LCA5Q86VQ0 697 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 GFM2Q969S9 779 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 DCLRE1BQ9H816 532 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 EIF2B3Q9NR50 452 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 MRPL17Q9NRX2 175 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 NMRK1Q9NWW6 199 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 SMAD6O43541 496 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 CCNT2O60583 730 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 TMCC1O94876 653 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 CYP11A1P05108 521 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 TPBGLP0DKB5 382 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 GCKP35557 465 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 CYTH1Q15438 398 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 DENND5AQ6IQ26 1287 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 PAOXQ6QHF9 649 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 POLR3BQ9NW08 1133 aaPredicted RBP13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 DONSONQ9NYP3 566 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 PLXNA1Q9UIW2 1896 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 PRUNE2Q8WUY3 3088 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 G3V2L1 256 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 SYN3O14994 580 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 UGT2B4P06133 528 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 ATP6V1B1P15313 513 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 EEF1DP29692 281 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 KPNA2P52292 529 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 POLE2P56282 527 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 ELAVL2Q12926 359 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 PRKAA1Q13131 559 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 IHHQ14623 411 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 LRRC74BQ6ZQY2 392 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 SH2D5Q6ZV89 423 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 ARCQ7LC44 396 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 FBXO39Q8N4B4 442 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 DNAJB14Q8TBM8 379 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 LRGUKQ96M69 825 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 MOSPD1Q9UJG1 213 aa13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 LSM7Q9UK45 103 aaKnown RBP13.75□□□□□ -0.21
CCDC88A-211ENST00000471947 INPPL1O15357 1258 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 EFNA1P20827 205 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 AIF1P55008 147 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 POU4F1Q01851 419 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 DSC1Q08554 894 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 FASTKQ14296 549 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 RANBP10Q6VN20 620 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 LYSMD3Q7Z3D4 306 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 APCDD1Q8J025 514 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 ACMSDQ8TDX5 336 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 INPP5DQ92835 1189 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 IL12RB2Q99665 862 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 IGFLR1Q9H665 355 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 ZFP14Q9HCL3 533 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 GALPQ9UBC7 116 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 BIRC5O15392 142 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 ARNTP27540 789 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 SERINC3Q13530 473 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 PSAPL1Q6NUJ1 521 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 IYDQ6PHW0 289 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 ASRGL1Q7L266 308 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 AMIGO2Q86SJ2 522 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 ULK4Q96C45 1275 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 LINGO1Q96FE5 620 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 CDKN2AIPNLQ96HQ2 116 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 GPR22Q99680 433 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 KIFC1Q9BW19 673 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 OLA1Q9NTK5 396 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 ZNF840PA6NDX5 716 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 A8MT66 165 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 UPK3BL1B0FP48 263 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 UPK3BL2E5RIL1 263 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 STC2O76061 302 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 PRAMEF12O95522 483 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 RECQLP46063 649 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 HCAR3P49019 387 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 TRIM71Q2Q1W2 868 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 DNAL1Q4LDG9 190 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 SPRED2Q7Z698 418 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 C2orf73Q8N5S3 287 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 WFDC5Q8TCV5 224 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 TSPAN17Q96FV3 270 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 FUBP3Q96I24 572 aaKnown RBP eCLIP13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 PANX3Q96QZ0 392 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 MRPL1Q9BYD6 325 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 SSU72Q9NP77 194 aaKnown RBP13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 OXSMQ9NWU1 459 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 FETUBQ9UGM5 382 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 PCDHB12Q9Y5F1 795 aa13.74□□□□□ -0.21
CCDC88A-211ENST00000471947 WDR90Q96KV7 1748 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 CRTAMO95727 393 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 ATP5F1P24539 256 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 PTK2BQ14289 1009 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 SEMA3AQ14563 771 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 PREPLQ4J6C6 727 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 SLC44A4Q53GD3 710 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 PIWIL4Q7Z3Z4 852 aaKnown RBP13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 PIANPQ8IYJ0 282 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 C12orf76Q8N812 135 aaPredicted RBP13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 CYB5D2Q8WUJ1 264 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 PYCR2Q96C36 320 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 IGSF21Q96ID5 467 aa13.73□□□□□ -0.21
CCDC88A-211ENST00000471947 ZNF570Q96NI8 536 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms